miRNA display CGI


Results 41 - 60 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5779 3' -54 NC_001806.1 + 23952 0.68 0.874369
Target:  5'- uGGG-GggGCCGccggagugguccGCcGAGCGCGGCGg- -3'
miRNA:   3'- -UCCaCuuUGGU------------UGuCUCGUGCCGCgu -5'
5779 3' -54 NC_001806.1 + 36228 0.68 0.874369
Target:  5'- --cUGGAGCUGAUGGAGCGCaGGUGCu -3'
miRNA:   3'- uccACUUUGGUUGUCUCGUG-CCGCGu -5'
5779 3' -54 NC_001806.1 + 84243 0.68 0.888748
Target:  5'- --cUGAAACaCGGCcgGGGGCGCGgGCGCAc -3'
miRNA:   3'- uccACUUUG-GUUG--UCUCGUGC-CGCGU- -5'
5779 3' -54 NC_001806.1 + 67780 0.68 0.895585
Target:  5'- cGGUGGguuguguuGGCCGACuG-GCcCGGCGCGu -3'
miRNA:   3'- uCCACU--------UUGGUUGuCuCGuGCCGCGU- -5'
5779 3' -54 NC_001806.1 + 31754 0.68 0.895585
Target:  5'- uGGUGuuAACC-ACAGAGCcGCGGCcCGg -3'
miRNA:   3'- uCCACu-UUGGuUGUCUCG-UGCCGcGU- -5'
5779 3' -54 NC_001806.1 + 151181 0.68 0.895585
Target:  5'- cGGUGAcGCgcaGGCGGAGgGCgaGGCGCGg -3'
miRNA:   3'- uCCACUuUGg--UUGUCUCgUG--CCGCGU- -5'
5779 3' -54 NC_001806.1 + 151278 0.68 0.895585
Target:  5'- cGGUgGggGCCGGggcCGGGGgGCGGCgGCGg -3'
miRNA:   3'- uCCA-CuuUGGUU---GUCUCgUGCCG-CGU- -5'
5779 3' -54 NC_001806.1 + 144216 0.67 0.902181
Target:  5'- ---cGAcACC-GCAGAGC-CGGCGCGc -3'
miRNA:   3'- uccaCUuUGGuUGUCUCGuGCCGCGU- -5'
5779 3' -54 NC_001806.1 + 39750 0.67 0.902181
Target:  5'- cAGGUGGGACCuggaAGGGCACGacccuaccCGCGa -3'
miRNA:   3'- -UCCACUUUGGuug-UCUCGUGCc-------GCGU- -5'
5779 3' -54 NC_001806.1 + 3459 0.67 0.902181
Target:  5'- cGGccacGcgGCCGGCcuGGGCGCGGCGCc -3'
miRNA:   3'- uCCa---CuuUGGUUGu-CUCGUGCCGCGu -5'
5779 3' -54 NC_001806.1 + 45331 0.67 0.914637
Target:  5'- cGGGcgcgaUGGGAUCGGgGGcGCGCGGUGCGa -3'
miRNA:   3'- -UCC-----ACUUUGGUUgUCuCGUGCCGCGU- -5'
5779 3' -54 NC_001806.1 + 122358 0.67 0.914637
Target:  5'- cGGUGGcgcGCUGGCGGAaguggcGCACGGcCGCGu -3'
miRNA:   3'- uCCACUu--UGGUUGUCU------CGUGCC-GCGU- -5'
5779 3' -54 NC_001806.1 + 90665 0.67 0.920493
Target:  5'- aAGGU--AACCAuagGCGGGGCGgaGGUGCAc -3'
miRNA:   3'- -UCCAcuUUGGU---UGUCUCGUg-CCGCGU- -5'
5779 3' -54 NC_001806.1 + 25486 0.67 0.925551
Target:  5'- gAGGUaGAGAugcccgaacccccCCGAgGGAGCGCGGgaCGCGc -3'
miRNA:   3'- -UCCA-CUUU-------------GGUUgUCUCGUGCC--GCGU- -5'
5779 3' -54 NC_001806.1 + 101015 0.67 0.9261
Target:  5'- cGG-GAGAgCGGCGGccCGCGGCGCu -3'
miRNA:   3'- uCCaCUUUgGUUGUCucGUGCCGCGu -5'
5779 3' -54 NC_001806.1 + 78326 0.67 0.9261
Target:  5'- cGGUccccGAGCUgggAACcGAGCGCGGCGCc -3'
miRNA:   3'- uCCAc---UUUGG---UUGuCUCGUGCCGCGu -5'
5779 3' -54 NC_001806.1 + 33281 0.67 0.930931
Target:  5'- cGGG-GAaaacgaaaaaacaGACCAGCGGccGGC-CGGCGCu -3'
miRNA:   3'- -UCCaCU-------------UUGGUUGUC--UCGuGCCGCGu -5'
5779 3' -54 NC_001806.1 + 51248 0.67 0.931456
Target:  5'- cGGGcGucACCAugcagcgcCGGAcGCGCGGCGCGa -3'
miRNA:   3'- -UCCaCuuUGGUu-------GUCU-CGUGCCGCGU- -5'
5779 3' -54 NC_001806.1 + 126142 0.66 0.936562
Target:  5'- cGGcGAGGCCGGCGccGAcaCGCGGCGCu -3'
miRNA:   3'- uCCaCUUUGGUUGU--CUc-GUGCCGCGu -5'
5779 3' -54 NC_001806.1 + 71698 0.66 0.936562
Target:  5'- cGGGUcucuGGCCAGCAGGGCacauaugaucGCGG-GCAc -3'
miRNA:   3'- -UCCAcu--UUGGUUGUCUCG----------UGCCgCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.