miRNA display CGI


Results 21 - 40 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5782 5' -58.7 NC_001806.1 + 74749 0.66 0.8051
Target:  5'- gCUCGagggaGCGCGGGAG-CGGGCGaagGUGg -3'
miRNA:   3'- -GAGUa----UGUGCCCUCgGCCCGCgg-UAC- -5'
5782 5' -58.7 NC_001806.1 + 71605 0.69 0.640814
Target:  5'- aCUCGUAgccuaauCAgGGGAaCCGGG-GCCAUGg -3'
miRNA:   3'- -GAGUAU-------GUgCCCUcGGCCCgCGGUAC- -5'
5782 5' -58.7 NC_001806.1 + 68088 0.75 0.311217
Target:  5'- -cCAccCACGcGAGCCGGGCGUCAUGg -3'
miRNA:   3'- gaGUauGUGCcCUCGGCCCGCGGUAC- -5'
5782 5' -58.7 NC_001806.1 + 62926 0.69 0.641821
Target:  5'- cCUCGUAC-CGcG-GCCGGGCGUCcgGa -3'
miRNA:   3'- -GAGUAUGuGCcCuCGGCCCGCGGuaC- -5'
5782 5' -58.7 NC_001806.1 + 62633 0.68 0.681951
Target:  5'- gCUCcagGCACGGGAGCgCcuGCGCCAc- -3'
miRNA:   3'- -GAGua-UGUGCCCUCG-GccCGCGGUac -5'
5782 5' -58.7 NC_001806.1 + 59045 0.67 0.740778
Target:  5'- cCUCc-ACGgGGGAGgCGGGgGCCAc- -3'
miRNA:   3'- -GAGuaUGUgCCCUCgGCCCgCGGUac -5'
5782 5' -58.7 NC_001806.1 + 48049 0.67 0.71166
Target:  5'- gCUgGUGCGCagcgcggcuacgGaGGAGCCagGGGCGCCGUu -3'
miRNA:   3'- -GAgUAUGUG------------C-CCUCGG--CCCGCGGUAc -5'
5782 5' -58.7 NC_001806.1 + 46103 0.66 0.8051
Target:  5'- gUCcgGCcCGGGGccuGCgCGGGCGCCu-- -3'
miRNA:   3'- gAGuaUGuGCCCU---CG-GCCCGCGGuac -5'
5782 5' -58.7 NC_001806.1 + 41823 0.74 0.355571
Target:  5'- --aAUACGCGGGGG-CGGGCGUCAg- -3'
miRNA:   3'- gagUAUGUGCCCUCgGCCCGCGGUac -5'
5782 5' -58.7 NC_001806.1 + 39202 0.67 0.759746
Target:  5'- gUC-UGCGuucuUGGGGGCCGGGCcccGCCGc- -3'
miRNA:   3'- gAGuAUGU----GCCCUCGGCCCG---CGGUac -5'
5782 5' -58.7 NC_001806.1 + 38650 0.66 0.778276
Target:  5'- cCUUAUACcCGuGGuGCCGGG-GCCGg- -3'
miRNA:   3'- -GAGUAUGuGC-CCuCGGCCCgCGGUac -5'
5782 5' -58.7 NC_001806.1 + 35271 0.66 0.76907
Target:  5'- ----cGCGCGGGAGUCguggcuuugGGGCGCaucCAUGg -3'
miRNA:   3'- gaguaUGUGCCCUCGG---------CCCGCG---GUAC- -5'
5782 5' -58.7 NC_001806.1 + 33615 0.68 0.701811
Target:  5'- -aCcgGCGCGGG-GCgGGGgGCCGg- -3'
miRNA:   3'- gaGuaUGUGCCCuCGgCCCgCGGUac -5'
5782 5' -58.7 NC_001806.1 + 31717 0.7 0.561662
Target:  5'- --gGUGCGUGGGAGUgGgGGUGCCAUGu -3'
miRNA:   3'- gagUAUGUGCCCUCGgC-CCGCGGUAC- -5'
5782 5' -58.7 NC_001806.1 + 31373 0.66 0.7963
Target:  5'- ----gAgGgGGGGGUCGGGCGCUggGUGg -3'
miRNA:   3'- gaguaUgUgCCCUCGGCCCGCGG--UAC- -5'
5782 5' -58.7 NC_001806.1 + 30410 0.67 0.721443
Target:  5'- -gCGgcuCGgGGGGGCCGGGCGUgGa- -3'
miRNA:   3'- gaGUau-GUgCCCUCGGCCCGCGgUac -5'
5782 5' -58.7 NC_001806.1 + 28516 0.68 0.661933
Target:  5'- aCUCAgACGCaGGGcCCGGGguCGCCGUGg -3'
miRNA:   3'- -GAGUaUGUGcCCUcGGCCC--GCGGUAC- -5'
5782 5' -58.7 NC_001806.1 + 28366 0.69 0.641821
Target:  5'- -aUAUAUACaGGGA-CCggGGGCGCCAUGu -3'
miRNA:   3'- gaGUAUGUG-CCCUcGG--CCCGCGGUAC- -5'
5782 5' -58.7 NC_001806.1 + 28299 1.08 0.001889
Target:  5'- aCUCAUACACGGGAGCCGGGCGCCAUGu -3'
miRNA:   3'- -GAGUAUGUGCCCUCGGCCCGCGGUAC- -5'
5782 5' -58.7 NC_001806.1 + 28210 0.75 0.297396
Target:  5'- -cCAUAUugGGGGGCgCcauauugggGGGCGCCAUGu -3'
miRNA:   3'- gaGUAUGugCCCUCG-G---------CCCGCGGUAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.