Results 21 - 40 of 219 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5793 | 3' | -63.2 | NC_001806.1 | + | 17799 | 0.74 | 0.208437 |
Target: 5'- aCCgUGGGCCGUGCcgacuCGGUUUUUGCCCg -3' miRNA: 3'- aGG-GCCCGGCAUGc----GCCGGAAGCGGG- -5' |
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5793 | 3' | -63.2 | NC_001806.1 | + | 30912 | 0.74 | 0.213342 |
Target: 5'- uUCCgGGGCCGUccccgcGgGCGGCCUaCGCgCu -3' miRNA: 3'- -AGGgCCCGGCA------UgCGCCGGAaGCGgG- -5' |
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5793 | 3' | -63.2 | NC_001806.1 | + | 49369 | 0.74 | 0.213342 |
Target: 5'- cCCCGGGCCcgAUGCGGCCcguaGCCa -3' miRNA: 3'- aGGGCCCGGcaUGCGCCGGaag-CGGg -5' |
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5793 | 3' | -63.2 | NC_001806.1 | + | 131990 | 0.74 | 0.218345 |
Target: 5'- -aCCGGGCCG---GUGGCCcugUUCGCCCc -3' miRNA: 3'- agGGCCCGGCaugCGCCGG---AAGCGGG- -5' |
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5793 | 3' | -63.2 | NC_001806.1 | + | 87877 | 0.74 | 0.218345 |
Target: 5'- gCCCcGGCCGUucAUGCGGCCguaccCGUCCa -3' miRNA: 3'- aGGGcCCGGCA--UGCGCCGGaa---GCGGG- -5' |
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5793 | 3' | -63.2 | NC_001806.1 | + | 54647 | 0.74 | 0.223449 |
Target: 5'- cUCCUGGGCCGUAa-CGGCCgacuuagcCGCCg -3' miRNA: 3'- -AGGGCCCGGCAUgcGCCGGaa------GCGGg -5' |
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5793 | 3' | -63.2 | NC_001806.1 | + | 36835 | 0.74 | 0.228653 |
Target: 5'- aCCCaGGCCGUACGCcgGGCCcaccccCGCCa -3' miRNA: 3'- aGGGcCCGGCAUGCG--CCGGaa----GCGGg -5' |
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5793 | 3' | -63.2 | NC_001806.1 | + | 138677 | 0.74 | 0.230764 |
Target: 5'- gCCCGGGCCuggAUGCGacccagaggacccucGCCUaCGCCCg -3' miRNA: 3'- aGGGCCCGGca-UGCGC---------------CGGAaGCGGG- -5' |
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5793 | 3' | -63.2 | NC_001806.1 | + | 136703 | 0.74 | 0.23937 |
Target: 5'- aCCgCGGGCCGccACGUGGCCgagcaGUCCg -3' miRNA: 3'- aGG-GCCCGGCa-UGCGCCGGaag--CGGG- -5' |
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5793 | 3' | -63.2 | NC_001806.1 | + | 129671 | 0.73 | 0.250502 |
Target: 5'- gCCCGGGCCGccgaGCGGCCcgucuccggaCGCCUc -3' miRNA: 3'- aGGGCCCGGCaug-CGCCGGaa--------GCGGG- -5' |
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5793 | 3' | -63.2 | NC_001806.1 | + | 136363 | 0.73 | 0.256227 |
Target: 5'- aCCCgGGGCCGgcgcgcucCGCGGCCUcCGCgaCCg -3' miRNA: 3'- aGGG-CCCGGCau------GCGCCGGAaGCG--GG- -5' |
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5793 | 3' | -63.2 | NC_001806.1 | + | 30632 | 0.73 | 0.256227 |
Target: 5'- aCUCaGGGCCGgggggGCGCGGCCaggguggGCCCg -3' miRNA: 3'- aGGG-CCCGGCa----UGCGCCGGaag----CGGG- -5' |
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5793 | 3' | -63.2 | NC_001806.1 | + | 22786 | 0.73 | 0.256227 |
Target: 5'- gCCCaGGCCGgccGCGUGGCCgucgagUGCCUg -3' miRNA: 3'- aGGGcCCGGCa--UGCGCCGGaa----GCGGG- -5' |
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5793 | 3' | -63.2 | NC_001806.1 | + | 114512 | 0.73 | 0.256227 |
Target: 5'- gCCgGGGCCGaccACGUGGCgaacgCGCCCa -3' miRNA: 3'- aGGgCCCGGCa--UGCGCCGgaa--GCGGG- -5' |
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5793 | 3' | -63.2 | NC_001806.1 | + | 23498 | 0.73 | 0.274045 |
Target: 5'- cCCCGuGGCCGUgucGCGcCGGCC--CGCCg -3' miRNA: 3'- aGGGC-CCGGCA---UGC-GCCGGaaGCGGg -5' |
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5793 | 3' | -63.2 | NC_001806.1 | + | 121402 | 0.72 | 0.280201 |
Target: 5'- cCCCGGaGCCGgGCGCGugcugcGCCUUgGgCCCg -3' miRNA: 3'- aGGGCC-CGGCaUGCGC------CGGAAgC-GGG- -5' |
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5793 | 3' | -63.2 | NC_001806.1 | + | 150862 | 0.72 | 0.280201 |
Target: 5'- uUCgCCGGGCCGgcucCGCgGGCCaggGCCCg -3' miRNA: 3'- -AG-GGCCCGGCau--GCG-CCGGaagCGGG- -5' |
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5793 | 3' | -63.2 | NC_001806.1 | + | 22879 | 0.72 | 0.286466 |
Target: 5'- gUCCCgGGGCUGgcCGgGGCCcg-GCCCg -3' miRNA: 3'- -AGGG-CCCGGCauGCgCCGGaagCGGG- -5' |
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5793 | 3' | -63.2 | NC_001806.1 | + | 98719 | 0.72 | 0.286466 |
Target: 5'- gUCCuGGCCGgccugGCgGCGGCCUucuUCGCCUu -3' miRNA: 3'- aGGGcCCGGCa----UG-CGCCGGA---AGCGGG- -5' |
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5793 | 3' | -63.2 | NC_001806.1 | + | 76834 | 0.72 | 0.293485 |
Target: 5'- gCCCGGGCCuccuacgcgacaggGCGCGcGCCUgcaggCGCUCu -3' miRNA: 3'- aGGGCCCGGca------------UGCGC-CGGAa----GCGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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