miRNA display CGI


Results 1 - 20 of 219 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5793 3' -63.2 NC_001806.1 + 33156 1.1 0.000654
Target:  5'- gUCCCGGGCCGUACGCGGCCUUCGCCCc -3'
miRNA:   3'- -AGGGCCCGGCAUGCGCCGGAAGCGGG- -5'
5793 3' -63.2 NC_001806.1 + 93200 0.82 0.060994
Target:  5'- cCCCGGGCCGgguuugugUGCGCGGCCUcaaGCCUc -3'
miRNA:   3'- aGGGCCCGGC--------AUGCGCCGGAag-CGGG- -5'
5793 3' -63.2 NC_001806.1 + 79527 0.81 0.076607
Target:  5'- gUCCC-GGCCGaaagcACGCGGCCggCGCCCg -3'
miRNA:   3'- -AGGGcCCGGCa----UGCGCCGGaaGCGGG- -5'
5793 3' -63.2 NC_001806.1 + 23466 0.81 0.076607
Target:  5'- cCCCGGGCCGccgcgGCGCaGGCC--CGCCCg -3'
miRNA:   3'- aGGGCCCGGCa----UGCG-CCGGaaGCGGG- -5'
5793 3' -63.2 NC_001806.1 + 41847 0.79 0.11254
Target:  5'- cCCCGGGCgCGUACGUgcgagcgcgcagguaGGCCUUgGCCg -3'
miRNA:   3'- aGGGCCCG-GCAUGCG---------------CCGGAAgCGGg -5'
5793 3' -63.2 NC_001806.1 + 1902 0.78 0.129156
Target:  5'- cCCCGGGCCGaacACGCGGCCcgagGCCa -3'
miRNA:   3'- aGGGCCCGGCa--UGCGCCGGaag-CGGg -5'
5793 3' -63.2 NC_001806.1 + 1559 0.77 0.135622
Target:  5'- -aCCGGGCCGggccgGCGCGcaccGCCUcgCGCCCc -3'
miRNA:   3'- agGGCCCGGCa----UGCGC----CGGAa-GCGGG- -5'
5793 3' -63.2 NC_001806.1 + 42373 0.77 0.153107
Target:  5'- gCCUGcaGGUCGUACGUGGCCcccgCGCCCc -3'
miRNA:   3'- aGGGC--CCGGCAUGCGCCGGaa--GCGGG- -5'
5793 3' -63.2 NC_001806.1 + 74535 0.76 0.155712
Target:  5'- cCCUGGGCCagcagcuggacagcgACGCGGCCUUuguuccugCGCCCg -3'
miRNA:   3'- aGGGCCCGGca-------------UGCGCCGGAA--------GCGGG- -5'
5793 3' -63.2 NC_001806.1 + 120914 0.76 0.156841
Target:  5'- uUCCCGGGCCGgagcuCGCGGCa--CGCgCg -3'
miRNA:   3'- -AGGGCCCGGCau---GCGCCGgaaGCGgG- -5'
5793 3' -63.2 NC_001806.1 + 115320 0.76 0.164557
Target:  5'- gUCCCGGGCCuu-CGCGGCCa-CGgCCa -3'
miRNA:   3'- -AGGGCCCGGcauGCGCCGGaaGCgGG- -5'
5793 3' -63.2 NC_001806.1 + 81342 0.76 0.168541
Target:  5'- aCgCGGGCCGcaaccAgGCGGCCggggcgUCGCCCg -3'
miRNA:   3'- aGgGCCCGGCa----UgCGCCGGa-----AGCGGG- -5'
5793 3' -63.2 NC_001806.1 + 21144 0.76 0.172612
Target:  5'- cCCCGGGCCccaccgACG-GGCCgcCGCCCa -3'
miRNA:   3'- aGGGCCCGGca----UGCgCCGGaaGCGGG- -5'
5793 3' -63.2 NC_001806.1 + 30180 0.75 0.184044
Target:  5'- cCCCGGGCCccccgcGUcCGCGGCCgcgucgggacccgcgCGCCCc -3'
miRNA:   3'- aGGGCCCGG------CAuGCGCCGGaa-------------GCGGG- -5'
5793 3' -63.2 NC_001806.1 + 17247 0.75 0.193848
Target:  5'- cUCCCc-GCCGUGCGUGGCCUUacaaaucugcaagUGCCCc -3'
miRNA:   3'- -AGGGccCGGCAUGCGCCGGAA-------------GCGGG- -5'
5793 3' -63.2 NC_001806.1 + 53256 0.75 0.19892
Target:  5'- cCCCGGGCCGcacCG-GGCCccCGCCCc -3'
miRNA:   3'- aGGGCCCGGCau-GCgCCGGaaGCGGG- -5'
5793 3' -63.2 NC_001806.1 + 21805 0.75 0.20363
Target:  5'- cCCCGGGCgG-ACGCcGCCccCGCCCg -3'
miRNA:   3'- aGGGCCCGgCaUGCGcCGGaaGCGGG- -5'
5793 3' -63.2 NC_001806.1 + 85748 0.75 0.20363
Target:  5'- gUCCGGaGCC--GCGCGGCCacgUCGUCCg -3'
miRNA:   3'- aGGGCC-CGGcaUGCGCCGGa--AGCGGG- -5'
5793 3' -63.2 NC_001806.1 + 4433 0.75 0.20363
Target:  5'- gCCCGGGCgGgg-GCGGCgUcCGCCCg -3'
miRNA:   3'- aGGGCCCGgCaugCGCCGgAaGCGGG- -5'
5793 3' -63.2 NC_001806.1 + 22079 0.74 0.207952
Target:  5'- cCCCGGggcggguGCUGUACgGCGGCCUgggcgacagcCGCCCg -3'
miRNA:   3'- aGGGCC-------CGGCAUG-CGCCGGAa---------GCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.