miRNA display CGI


Results 1 - 20 of 219 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5793 3' -63.2 NC_001806.1 + 343 0.66 0.589862
Target:  5'- gCCCGGaccGCCGcccgccuuuuuUGCGCGcGCgcgCGCCCg -3'
miRNA:   3'- aGGGCC---CGGC-----------AUGCGC-CGgaaGCGGG- -5'
5793 3' -63.2 NC_001806.1 + 1329 0.67 0.570738
Target:  5'- uUCCCGccGCgGggGCGUGGCCaa-GCCCg -3'
miRNA:   3'- -AGGGCc-CGgCa-UGCGCCGGaagCGGG- -5'
5793 3' -63.2 NC_001806.1 + 1435 0.69 0.443264
Target:  5'- aUCCCGGGCgGcGCcgGCGGCagg-GCCCc -3'
miRNA:   3'- -AGGGCCCGgCaUG--CGCCGgaagCGGG- -5'
5793 3' -63.2 NC_001806.1 + 1461 0.68 0.487155
Target:  5'- nCCCGGGCCGUcguCGUcGCCgcgcaGCaCCa -3'
miRNA:   3'- aGGGCCCGGCAu--GCGcCGGaag--CG-GG- -5'
5793 3' -63.2 NC_001806.1 + 1559 0.77 0.135622
Target:  5'- -aCCGGGCCGggccgGCGCGcaccGCCUcgCGCCCc -3'
miRNA:   3'- agGGCCCGGCa----UGCGC----CGGAa-GCGGG- -5'
5793 3' -63.2 NC_001806.1 + 1606 0.7 0.409805
Target:  5'- --aCGGGCCGca-GCGGCg--CGCCCa -3'
miRNA:   3'- aggGCCCGGCaugCGCCGgaaGCGGG- -5'
5793 3' -63.2 NC_001806.1 + 1710 0.69 0.451867
Target:  5'- cCCCGaGGCCGccGCcCGGCCguccagCGCCg -3'
miRNA:   3'- aGGGC-CCGGCa-UGcGCCGGaa----GCGGg -5'
5793 3' -63.2 NC_001806.1 + 1857 0.68 0.523693
Target:  5'- gUCgGGGUacaggcgcgCGUGCGCGGCCUccacgCGCgCg -3'
miRNA:   3'- aGGgCCCG---------GCAUGCGCCGGAa----GCGgG- -5'
5793 3' -63.2 NC_001806.1 + 1902 0.78 0.129156
Target:  5'- cCCCGGGCCGaacACGCGGCCcgagGCCa -3'
miRNA:   3'- aGGGCCCGGCa--UGCGCCGGaag-CGGg -5'
5793 3' -63.2 NC_001806.1 + 2309 0.69 0.443264
Target:  5'- cCCCGaGGCCccgcCGcCGGCCagguccUCGCCCg -3'
miRNA:   3'- aGGGC-CCGGcau-GC-GCCGGa-----AGCGGG- -5'
5793 3' -63.2 NC_001806.1 + 2495 0.66 0.635146
Target:  5'- gUCgCCGccGCCGcACGCGGCCUgggcggcgggggcggGCCCg -3'
miRNA:   3'- -AG-GGCc-CGGCaUGCGCCGGAag-------------CGGG- -5'
5793 3' -63.2 NC_001806.1 + 3453 0.67 0.546114
Target:  5'- aCUCGacGGCC--ACGCGGCCggccugggcgcggCGCCCg -3'
miRNA:   3'- aGGGC--CCGGcaUGCGCCGGaa-----------GCGGG- -5'
5793 3' -63.2 NC_001806.1 + 3590 0.68 0.487155
Target:  5'- cCCgCGGcGCCGUACccgGCGGgcaCCgcgcgcUCGCCCg -3'
miRNA:   3'- aGG-GCC-CGGCAUG---CGCC---GGa-----AGCGGG- -5'
5793 3' -63.2 NC_001806.1 + 4027 0.66 0.638042
Target:  5'- aUCa-GGGCguacUGcUGCGCGGCg-UCGCCCa -3'
miRNA:   3'- -AGggCCCG----GC-AUGCGCCGgaAGCGGG- -5'
5793 3' -63.2 NC_001806.1 + 4058 0.66 0.638042
Target:  5'- gCUCGGGCgCccACaCGGCCgccggggCGCCCg -3'
miRNA:   3'- aGGGCCCG-GcaUGcGCCGGaa-----GCGGG- -5'
5793 3' -63.2 NC_001806.1 + 4132 0.68 0.478207
Target:  5'- cCCCaGaGGCCc-GgGCGGCUgUCGCCCa -3'
miRNA:   3'- aGGG-C-CCGGcaUgCGCCGGaAGCGGG- -5'
5793 3' -63.2 NC_001806.1 + 4311 0.67 0.570738
Target:  5'- gCCCGuGG-CGU-CGCGGCCggccacCGCCg -3'
miRNA:   3'- aGGGC-CCgGCAuGCGCCGGaa----GCGGg -5'
5793 3' -63.2 NC_001806.1 + 4433 0.75 0.20363
Target:  5'- gCCCGGGCgGgg-GCGGCgUcCGCCCg -3'
miRNA:   3'- aGGGCCCGgCaugCGCCGgAaGCGGG- -5'
5793 3' -63.2 NC_001806.1 + 4664 0.66 0.589862
Target:  5'- -gCUGGGCCGgcggGCGCGGCgacaggCgGUCCg -3'
miRNA:   3'- agGGCCCGGCa---UGCGCCGgaa---G-CGGG- -5'
5793 3' -63.2 NC_001806.1 + 4741 0.71 0.333416
Target:  5'- cCCCGGGCCGg----GGCCcggUCGCCg -3'
miRNA:   3'- aGGGCCCGGCaugcgCCGGa--AGCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.