miRNA display CGI


Results 1 - 20 of 219 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5793 3' -63.2 NC_001806.1 + 23700 0.65 0.644798
Target:  5'- gCCCuGGCCucgaucgccgcgcgGUGCGCcgGGCC--CGCCCc -3'
miRNA:   3'- aGGGcCCGG--------------CAUGCG--CCGGaaGCGGG- -5'
5793 3' -63.2 NC_001806.1 + 146642 0.66 0.589862
Target:  5'- gUCCCGGGUCG-ACGCccCCUgcUC-CCCg -3'
miRNA:   3'- -AGGGCCCGGCaUGCGccGGA--AGcGGG- -5'
5793 3' -63.2 NC_001806.1 + 99200 0.66 0.599467
Target:  5'- cCCCGGG-UGUcCGCGGCCUguuUCCu -3'
miRNA:   3'- aGGGCCCgGCAuGCGCCGGAagcGGG- -5'
5793 3' -63.2 NC_001806.1 + 151513 0.66 0.609094
Target:  5'- aCCUGGGaCUGUGCGguUGGgaCggCGCCCg -3'
miRNA:   3'- aGGGCCC-GGCAUGC--GCCg-GaaGCGGG- -5'
5793 3' -63.2 NC_001806.1 + 111201 0.66 0.599467
Target:  5'- cCCUGGggauaGCC-UGCGCGGCCgggGCCUc -3'
miRNA:   3'- aGGGCC-----CGGcAUGCGCCGGaagCGGG- -5'
5793 3' -63.2 NC_001806.1 + 10540 0.66 0.607167
Target:  5'- -aCCGaGGCCacUugGCGaGCCggguccuuuaugUCGCCCa -3'
miRNA:   3'- agGGC-CCGGc-AugCGC-CGGa-----------AGCGGG- -5'
5793 3' -63.2 NC_001806.1 + 152053 0.66 0.589862
Target:  5'- gCCCGGaccGCCGcccgccuuuuuUGCGCGcGCgcgCGCCCg -3'
miRNA:   3'- aGGGCC---CGGC-----------AUGCGC-CGgaaGCGGG- -5'
5793 3' -63.2 NC_001806.1 + 109407 0.66 0.599467
Target:  5'- aCCCggcgauGGGUCGUgggGCGCGGCg---GCCCg -3'
miRNA:   3'- aGGG------CCCGGCA---UGCGCCGgaagCGGG- -5'
5793 3' -63.2 NC_001806.1 + 75359 0.66 0.589862
Target:  5'- cCCUGGaCgCGcGgGUGGCCaUCGCCCa -3'
miRNA:   3'- aGGGCCcG-GCaUgCGCCGGaAGCGGG- -5'
5793 3' -63.2 NC_001806.1 + 54088 0.66 0.589862
Target:  5'- aCCCaGGCCGcgGCGgGgaGCCga-GCCCg -3'
miRNA:   3'- aGGGcCCGGCa-UGCgC--CGGaagCGGG- -5'
5793 3' -63.2 NC_001806.1 + 95298 0.66 0.589862
Target:  5'- ---gGGGCgGgggGCGCGGCggacgCGCCCa -3'
miRNA:   3'- agggCCCGgCa--UGCGCCGgaa--GCGGG- -5'
5793 3' -63.2 NC_001806.1 + 4664 0.66 0.589862
Target:  5'- -gCUGGGCCGgcggGCGCGGCgacaggCgGUCCg -3'
miRNA:   3'- agGGCCCGGCa---UGCGCCGgaa---G-CGGG- -5'
5793 3' -63.2 NC_001806.1 + 30386 0.66 0.599467
Target:  5'- -gCCGGGCgCGUGCGaCGGUgg-CGCgCg -3'
miRNA:   3'- agGGCCCG-GCAUGC-GCCGgaaGCGgG- -5'
5793 3' -63.2 NC_001806.1 + 107516 0.66 0.609094
Target:  5'- cUUCCGGaccacuuuucGCCaUGCGCGGCCUcccugCGCUUu -3'
miRNA:   3'- -AGGGCC----------CGGcAUGCGCCGGAa----GCGGG- -5'
5793 3' -63.2 NC_001806.1 + 106241 0.66 0.589862
Target:  5'- uUCCCGGGCCuggGUaACGUuuucGGCCgUCccugaccccgagGCCCu -3'
miRNA:   3'- -AGGGCCCGG---CA-UGCG----CCGGaAG------------CGGG- -5'
5793 3' -63.2 NC_001806.1 + 80013 0.66 0.589862
Target:  5'- uUCCCguaggcGGGCCGca-GCGGCgCcuuacgCGCCCc -3'
miRNA:   3'- -AGGG------CCCGGCaugCGCCG-Gaa----GCGGG- -5'
5793 3' -63.2 NC_001806.1 + 135803 0.66 0.589862
Target:  5'- gUCCUGGcCCGcagaccCGCGGCUguuucCGCCCu -3'
miRNA:   3'- -AGGGCCcGGCau----GCGCCGGaa---GCGGG- -5'
5793 3' -63.2 NC_001806.1 + 125852 0.66 0.599467
Target:  5'- cCCCcGGCCGc-CGCGgacGCCguggCGCCCc -3'
miRNA:   3'- aGGGcCCGGCauGCGC---CGGaa--GCGGG- -5'
5793 3' -63.2 NC_001806.1 + 343 0.66 0.589862
Target:  5'- gCCCGGaccGCCGcccgccuuuuuUGCGCGcGCgcgCGCCCg -3'
miRNA:   3'- aGGGCC---CGGC-----------AUGCGC-CGgaaGCGGG- -5'
5793 3' -63.2 NC_001806.1 + 37529 0.66 0.599467
Target:  5'- gCUCGGGCCGUGgGCGaCCaaggUUuCCCa -3'
miRNA:   3'- aGGGCCCGGCAUgCGCcGGa---AGcGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.