miRNA display CGI


Results 1 - 20 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5793 5' -49.9 NC_001806.1 + 151273 0.68 0.988391
Target:  5'- cCGGGCGGugGggGCcggggCCggggGGCGGCg -3'
miRNA:   3'- uGUCUGCUugCuuUGuaa--GG----CCGCUG- -5'
5793 5' -49.9 NC_001806.1 + 151189 0.69 0.973736
Target:  5'- cGCAGGCGGaggGCGAGGCG---CGGCGGa -3'
miRNA:   3'- -UGUCUGCU---UGCUUUGUaagGCCGCUg -5'
5793 5' -49.9 NC_001806.1 + 148184 0.67 0.992247
Target:  5'- -gGGGgGcGCGggGCG-UCCGGCGGg -3'
miRNA:   3'- ugUCUgCuUGCuuUGUaAGGCCGCUg -5'
5793 5' -49.9 NC_001806.1 + 147481 0.67 0.992247
Target:  5'- gGCGGAgggGAGCGggGCGgcgCCggagggGGCGGCg -3'
miRNA:   3'- -UGUCUg--CUUGCuuUGUaa-GG------CCGCUG- -5'
5793 5' -49.9 NC_001806.1 + 147187 0.69 0.973736
Target:  5'- gGCGGaaGCGGAgGAGgacGCGgccCCGGCGGCg -3'
miRNA:   3'- -UGUC--UGCUUgCUU---UGUaa-GGCCGCUG- -5'
5793 5' -49.9 NC_001806.1 + 143378 0.7 0.957134
Target:  5'- gGCAGACcGACGGcGACAacgcuccCCGGCGGCc -3'
miRNA:   3'- -UGUCUGcUUGCU-UUGUaa-----GGCCGCUG- -5'
5793 5' -49.9 NC_001806.1 + 142221 0.67 0.993277
Target:  5'- uGCAGGCccGCuucAUcgUCCGGCGGCa -3'
miRNA:   3'- -UGUCUGcuUGcuuUGuaAGGCCGCUG- -5'
5793 5' -49.9 NC_001806.1 + 139208 0.68 0.989813
Target:  5'- uGCGGACGAGCu--GCGga--GGCGGCa -3'
miRNA:   3'- -UGUCUGCUUGcuuUGUaaggCCGCUG- -5'
5793 5' -49.9 NC_001806.1 + 138778 0.66 0.996912
Target:  5'- cGCAGGCGucgguaauggccGACGcAGGCGcccCCGGCGAg -3'
miRNA:   3'- -UGUCUGC------------UUGC-UUUGUaa-GGCCGCUg -5'
5793 5' -49.9 NC_001806.1 + 134444 0.68 0.988391
Target:  5'- gGCAG-CGAACGcguucgaauggGGACGUg-CGGCGACc -3'
miRNA:   3'- -UGUCuGCUUGC-----------UUUGUAagGCCGCUG- -5'
5793 5' -49.9 NC_001806.1 + 131946 0.68 0.986819
Target:  5'- gGCGGGCGcuguACGcguGCGUcCUGGCGGCc -3'
miRNA:   3'- -UGUCUGCu---UGCuu-UGUAaGGCCGCUG- -5'
5793 5' -49.9 NC_001806.1 + 128492 0.67 0.991096
Target:  5'- aGCAGACGuuuccGGCGAucAGCGUggCGuGCGGCa -3'
miRNA:   3'- -UGUCUGC-----UUGCU--UUGUAagGC-CGCUG- -5'
5793 5' -49.9 NC_001806.1 + 126130 0.68 0.98319
Target:  5'- cGCGGACGAcggcgGCGAGGCcggcgCCGacacGCGGCg -3'
miRNA:   3'- -UGUCUGCU-----UGCUUUGuaa--GGC----CGCUG- -5'
5793 5' -49.9 NC_001806.1 + 124495 0.66 0.997394
Target:  5'- uGCGGuCGGACGccgucuCGcUCCGGCGGg -3'
miRNA:   3'- -UGUCuGCUUGCuuu---GUaAGGCCGCUg -5'
5793 5' -49.9 NC_001806.1 + 121022 0.69 0.973736
Target:  5'- gGCGGACGAGCGGcuCAagaucUUUCGGUGuCu -3'
miRNA:   3'- -UGUCUGCUUGCUuuGU-----AAGGCCGCuG- -5'
5793 5' -49.9 NC_001806.1 + 120320 0.66 0.995727
Target:  5'- -uGGGgGGACGggGCggUCgggGGCGGCg -3'
miRNA:   3'- ugUCUgCUUGCuuUGuaAGg--CCGCUG- -5'
5793 5' -49.9 NC_001806.1 + 119732 0.7 0.957134
Target:  5'- cGCGGAUGG--GAAGCccuggCCGGCGGCg -3'
miRNA:   3'- -UGUCUGCUugCUUUGuaa--GGCCGCUG- -5'
5793 5' -49.9 NC_001806.1 + 119345 0.67 0.991096
Target:  5'- cCGGAgGAGCagcuGACGgcccCCGGCGGCg -3'
miRNA:   3'- uGUCUgCUUGcu--UUGUaa--GGCCGCUG- -5'
5793 5' -49.9 NC_001806.1 + 108503 0.68 0.986486
Target:  5'- -gAGACGAACGGuaagaAGCAcauccagguacCCGGCGGCc -3'
miRNA:   3'- ugUCUGCUUGCU-----UUGUaa---------GGCCGCUG- -5'
5793 5' -49.9 NC_001806.1 + 103938 0.67 0.991096
Target:  5'- cGCGGcUGAcGCGGAGCGUccgUUgGGCGACa -3'
miRNA:   3'- -UGUCuGCU-UGCUUUGUA---AGgCCGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.