miRNA display CGI


Results 1 - 20 of 236 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5794 3' -53.2 NC_001806.1 + 22549 0.65 0.976442
Target:  5'- cGCGAGAAcgcggcgcuGACGGGggccgcggggagccCCGGC-GCCGGCg -3'
miRNA:   3'- -UGCUUUU---------UUGUCU--------------GGUCGcCGGCCGg -5'
5794 3' -53.2 NC_001806.1 + 151524 0.66 0.962411
Target:  5'- uGCGGuuGGGACGGcGCCcgugggcccgGGCGGCCGGg- -3'
miRNA:   3'- -UGCUu-UUUUGUC-UGG----------UCGCCGGCCgg -5'
5794 3' -53.2 NC_001806.1 + 100081 0.66 0.961708
Target:  5'- cCGAcccc-CGGACCccagggucucccGCGGCCGGCUg -3'
miRNA:   3'- uGCUuuuuuGUCUGGu-----------CGCCGGCCGG- -5'
5794 3' -53.2 NC_001806.1 + 72064 0.66 0.961708
Target:  5'- gGCGAGGugggcuucuuCGGggaGCCcGCGGCgGGCCu -3'
miRNA:   3'- -UGCUUUuuu-------GUC---UGGuCGCCGgCCGG- -5'
5794 3' -53.2 NC_001806.1 + 145411 0.66 0.962411
Target:  5'- gGCuGGAAGACc-GCCAgGgGGUCGGCCg -3'
miRNA:   3'- -UGcUUUUUUGucUGGU-CgCCGGCCGG- -5'
5794 3' -53.2 NC_001806.1 + 147481 0.66 0.965793
Target:  5'- gGCGGAGggGAGCGGGgCGGCG-CCGGa- -3'
miRNA:   3'- -UGCUUU--UUUGUCUgGUCGCcGGCCgg -5'
5794 3' -53.2 NC_001806.1 + 44421 0.66 0.964802
Target:  5'- aGCGAcGAccgccccaacacauAGCAGGCC-GCGGgcCCGGCg -3'
miRNA:   3'- -UGCUuUU--------------UUGUCUGGuCGCC--GGCCGg -5'
5794 3' -53.2 NC_001806.1 + 21293 0.66 0.965793
Target:  5'- gACGGGAGGGCc--CCcGCGGCgGGCa -3'
miRNA:   3'- -UGCUUUUUUGucuGGuCGCCGgCCGg -5'
5794 3' -53.2 NC_001806.1 + 145254 0.66 0.965793
Target:  5'- aACGAcaGGGGGCGccCCAGaggcuaaGGUCGGCCa -3'
miRNA:   3'- -UGCU--UUUUUGUcuGGUCg------CCGGCCGG- -5'
5794 3' -53.2 NC_001806.1 + 51132 0.66 0.962411
Target:  5'- uCGggGAGGCGcgcGACCGGgcugggaGGCCcGCCa -3'
miRNA:   3'- uGCuuUUUUGU---CUGGUCg------CCGGcCGG- -5'
5794 3' -53.2 NC_001806.1 + 53153 0.66 0.968955
Target:  5'- uACGAAAacgucugcguGAACAcGGCgaaugCAGC-GCCGGCCu -3'
miRNA:   3'- -UGCUUU----------UUUGU-CUG-----GUCGcCGGCCGG- -5'
5794 3' -53.2 NC_001806.1 + 4657 0.66 0.965793
Target:  5'- cGCGGc--GGCuGGGCCGGCGGgCgCGGCg -3'
miRNA:   3'- -UGCUuuuUUG-UCUGGUCGCC-G-GCCGg -5'
5794 3' -53.2 NC_001806.1 + 10094 0.66 0.965793
Target:  5'- gGCGAGAcGuccacguacucGCGGcGCaCGGCGcGUCGGCCg -3'
miRNA:   3'- -UGCUUUuU-----------UGUC-UG-GUCGC-CGGCCGG- -5'
5794 3' -53.2 NC_001806.1 + 2549 0.66 0.968029
Target:  5'- gGCGAucGAGGCcaGGGCCcGCgggucaaacaugagGGCCGGUCg -3'
miRNA:   3'- -UGCUu-UUUUG--UCUGGuCG--------------CCGGCCGG- -5'
5794 3' -53.2 NC_001806.1 + 19642 0.66 0.968955
Target:  5'- gACGAGcagGAAGCGGuCCAcgcaacggucGCcGCCGGUCg -3'
miRNA:   3'- -UGCUU---UUUUGUCuGGU----------CGcCGGCCGG- -5'
5794 3' -53.2 NC_001806.1 + 135565 0.66 0.962411
Target:  5'- cCGGuc--ACGGACuCGGCcgccaGGUCGGCCg -3'
miRNA:   3'- uGCUuuuuUGUCUG-GUCG-----CCGGCCGG- -5'
5794 3' -53.2 NC_001806.1 + 127894 0.66 0.968955
Target:  5'- -aGAu-AGGCgcgGGugCAGCGGagcaCGGCCa -3'
miRNA:   3'- ugCUuuUUUG---UCugGUCGCCg---GCCGG- -5'
5794 3' -53.2 NC_001806.1 + 128534 0.66 0.965793
Target:  5'- uGCGGGcc-GCAG-CCAGaCGGC-GGCCc -3'
miRNA:   3'- -UGCUUuuuUGUCuGGUC-GCCGgCCGG- -5'
5794 3' -53.2 NC_001806.1 + 19878 0.66 0.968648
Target:  5'- --aAAAAGGCGGACCGGUGGgUuucugucgucggaGGCCc -3'
miRNA:   3'- ugcUUUUUUGUCUGGUCGCCgG-------------CCGG- -5'
5794 3' -53.2 NC_001806.1 + 119481 0.66 0.965793
Target:  5'- cGCGGAc---CGGGCguGCGGCCuguGGCg -3'
miRNA:   3'- -UGCUUuuuuGUCUGguCGCCGG---CCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.