miRNA display CGI


Results 1 - 20 of 236 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5794 3' -53.2 NC_001806.1 + 33288 1.13 0.003083
Target:  5'- aACGAAAAAACAGACCAGCGGCCGGCCg -3'
miRNA:   3'- -UGCUUUUUUGUCUGGUCGCCGGCCGG- -5'
5794 3' -53.2 NC_001806.1 + 119732 0.81 0.32432
Target:  5'- cGCGGAuggGAAGCccuGGCCGGCGGCgaCGGCCg -3'
miRNA:   3'- -UGCUU---UUUUGu--CUGGUCGCCG--GCCGG- -5'
5794 3' -53.2 NC_001806.1 + 3442 0.8 0.331888
Target:  5'- gGCGGccAGGCAcucgacGGCCAcGCGGCCGGCCu -3'
miRNA:   3'- -UGCUuuUUUGU------CUGGU-CGCCGGCCGG- -5'
5794 3' -53.2 NC_001806.1 + 132925 0.79 0.379988
Target:  5'- -gGggGGAGCGGGCUGGCGGacccccaCGGCCg -3'
miRNA:   3'- ugCuuUUUUGUCUGGUCGCCg------GCCGG- -5'
5794 3' -53.2 NC_001806.1 + 3314 0.79 0.388446
Target:  5'- gGCGggGAAGCgGGGCCcGCGGgucccuCCGGCCg -3'
miRNA:   3'- -UGCuuUUUUG-UCUGGuCGCC------GGCCGG- -5'
5794 3' -53.2 NC_001806.1 + 2990 0.79 0.405727
Target:  5'- cGCGggGAGGCGGcggcggccGCCAGCGcGUCGGCg -3'
miRNA:   3'- -UGCuuUUUUGUC--------UGGUCGC-CGGCCGg -5'
5794 3' -53.2 NC_001806.1 + 3811 0.78 0.432535
Target:  5'- cGCGugcgc-CAGGCCccagccgaAGCGGCCGGCCg -3'
miRNA:   3'- -UGCuuuuuuGUCUGG--------UCGCCGGCCGG- -5'
5794 3' -53.2 NC_001806.1 + 64884 0.78 0.441698
Target:  5'- gGCGGGAucggccGCaAGACCAGC-GCCGGCCu -3'
miRNA:   3'- -UGCUUUuu----UG-UCUGGUCGcCGGCCGG- -5'
5794 3' -53.2 NC_001806.1 + 65721 0.78 0.441698
Target:  5'- gACGGGAGAggauGCGGcUgGGCGGCUGGCCa -3'
miRNA:   3'- -UGCUUUUU----UGUCuGgUCGCCGGCCGG- -5'
5794 3' -53.2 NC_001806.1 + 1430 0.78 0.45097
Target:  5'- aGCGAAucccGGGCGGcGCCGGCGGCagGGCCc -3'
miRNA:   3'- -UGCUUu---UUUGUC-UGGUCGCCGg-CCGG- -5'
5794 3' -53.2 NC_001806.1 + 77383 0.78 0.460348
Target:  5'- gACGGGc--GCGGGCgCGGCGGCCGcGCCc -3'
miRNA:   3'- -UGCUUuuuUGUCUG-GUCGCCGGC-CGG- -5'
5794 3' -53.2 NC_001806.1 + 23037 0.77 0.479407
Target:  5'- cGCGggGAccuGCGcguGGCCGGCGGCagcgaGGCCg -3'
miRNA:   3'- -UGCuuUUu--UGU---CUGGUCGCCGg----CCGG- -5'
5794 3' -53.2 NC_001806.1 + 2917 0.76 0.55905
Target:  5'- uCGggGGucGCGGGCCgccgccuccgGGCGGCCgGGCCg -3'
miRNA:   3'- uGCuuUUu-UGUCUGG----------UCGCCGG-CCGG- -5'
5794 3' -53.2 NC_001806.1 + 4297 0.75 0.588905
Target:  5'- cCGGccguGAAGCGGcCCGuggcgucGCGGCCGGCCa -3'
miRNA:   3'- uGCUu---UUUUGUCuGGU-------CGCCGGCCGG- -5'
5794 3' -53.2 NC_001806.1 + 73445 0.75 0.58994
Target:  5'- gACGcacaccCAGGCCggGGUGGCCGGCCc -3'
miRNA:   3'- -UGCuuuuuuGUCUGG--UCGCCGGCCGG- -5'
5794 3' -53.2 NC_001806.1 + 66512 0.75 0.610704
Target:  5'- cGCGggGuuuGgGGAUUGGCGGCCaGGCCc -3'
miRNA:   3'- -UGCuuUuu-UgUCUGGUCGCCGG-CCGG- -5'
5794 3' -53.2 NC_001806.1 + 23925 0.75 0.610704
Target:  5'- gGCGAGGAccu-GGCCGGCGGCgGGgCCu -3'
miRNA:   3'- -UGCUUUUuuguCUGGUCGCCGgCC-GG- -5'
5794 3' -53.2 NC_001806.1 + 5494 0.74 0.621115
Target:  5'- gGCGGGAAGGaGGAgCAGCGgaggccGCCGGCCc -3'
miRNA:   3'- -UGCUUUUUUgUCUgGUCGC------CGGCCGG- -5'
5794 3' -53.2 NC_001806.1 + 20726 0.74 0.631534
Target:  5'- cCGggGGGGCgggGGGCCGGCGGCCuccGCUg -3'
miRNA:   3'- uGCuuUUUUG---UCUGGUCGCCGGc--CGG- -5'
5794 3' -53.2 NC_001806.1 + 20333 0.74 0.641954
Target:  5'- aAUGggGGGGCggcaAGGCgGGCGGCCcuugGGCCg -3'
miRNA:   3'- -UGCuuUUUUG----UCUGgUCGCCGG----CCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.