miRNA display CGI


Results 1 - 20 of 236 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5794 3' -53.2 NC_001806.1 + 1430 0.78 0.45097
Target:  5'- aGCGAAucccGGGCGGcGCCGGCGGCagGGCCc -3'
miRNA:   3'- -UGCUUu---UUUGUC-UGGUCGCCGg-CCGG- -5'
5794 3' -53.2 NC_001806.1 + 1651 0.67 0.954965
Target:  5'- uGCGAGugGgccuccuccucGCAGAaguCCGGCGcGCCGGgCg -3'
miRNA:   3'- -UGCUUuuU-----------UGUCU---GGUCGC-CGGCCgG- -5'
5794 3' -53.2 NC_001806.1 + 1765 0.69 0.889956
Target:  5'- cGCGggGAcAugGGcACCGGCGuGuCCgGGCCg -3'
miRNA:   3'- -UGCuuUU-UugUC-UGGUCGC-C-GG-CCGG- -5'
5794 3' -53.2 NC_001806.1 + 1832 0.68 0.937225
Target:  5'- cGCGGc---ACAGGCgCAGCGG-CGGCg -3'
miRNA:   3'- -UGCUuuuuUGUCUG-GUCGCCgGCCGg -5'
5794 3' -53.2 NC_001806.1 + 1893 0.74 0.652366
Target:  5'- cGCGAAGAccccCGGGCCGaacacGCGGCCcgaGGCCa -3'
miRNA:   3'- -UGCUUUUuu--GUCUGGU-----CGCCGG---CCGG- -5'
5794 3' -53.2 NC_001806.1 + 1937 0.67 0.946579
Target:  5'- uGCGGc---GCAGGuCCcGCGccGCCGGCCa -3'
miRNA:   3'- -UGCUuuuuUGUCU-GGuCGC--CGGCCGG- -5'
5794 3' -53.2 NC_001806.1 + 2019 0.72 0.734292
Target:  5'- cGCGAcaccGCGGGCCcGuCGGCgGGCCa -3'
miRNA:   3'- -UGCUuuuuUGUCUGGuC-GCCGgCCGG- -5'
5794 3' -53.2 NC_001806.1 + 2281 0.68 0.920776
Target:  5'- cGCGcuc-GGCGGACCacuccGGCGGCCcccccgaGGCCc -3'
miRNA:   3'- -UGCuuuuUUGUCUGG-----UCGCCGG-------CCGG- -5'
5794 3' -53.2 NC_001806.1 + 2549 0.66 0.968029
Target:  5'- gGCGAucGAGGCcaGGGCCcGCgggucaaacaugagGGCCGGUCg -3'
miRNA:   3'- -UGCUu-UUUUG--UCUGGuCG--------------CCGGCCGG- -5'
5794 3' -53.2 NC_001806.1 + 2640 0.71 0.827847
Target:  5'- cGCGggGAGcagUAGGCCuccagGGCGGC-GGCCg -3'
miRNA:   3'- -UGCuuUUUu--GUCUGG-----UCGCCGgCCGG- -5'
5794 3' -53.2 NC_001806.1 + 2730 0.71 0.792141
Target:  5'- uCGggGcccucGGCGGGCCGGCGcGacaCGGCCa -3'
miRNA:   3'- uGCuuUu----UUGUCUGGUCGC-Cg--GCCGG- -5'
5794 3' -53.2 NC_001806.1 + 2762 0.71 0.810329
Target:  5'- cACGggGcgcGGGCGGGCCugcgccGCGGC-GGCCc -3'
miRNA:   3'- -UGCuuU---UUUGUCUGGu-----CGCCGgCCGG- -5'
5794 3' -53.2 NC_001806.1 + 2858 0.66 0.971902
Target:  5'- cGCGggGAGGgGGGCgCgGGCGuCCGaGCCg -3'
miRNA:   3'- -UGCuuUUUUgUCUG-G-UCGCcGGC-CGG- -5'
5794 3' -53.2 NC_001806.1 + 2917 0.76 0.55905
Target:  5'- uCGggGGucGCGGGCCgccgccuccgGGCGGCCgGGCCg -3'
miRNA:   3'- uGCuuUUu-UGUCUGG----------UCGCCGG-CCGG- -5'
5794 3' -53.2 NC_001806.1 + 2990 0.79 0.405727
Target:  5'- cGCGggGAGGCGGcggcggccGCCAGCGcGUCGGCg -3'
miRNA:   3'- -UGCuuUUUUGUC--------UGGUCGC-CGGCCGg -5'
5794 3' -53.2 NC_001806.1 + 3314 0.79 0.388446
Target:  5'- gGCGggGAAGCgGGGCCcGCGGgucccuCCGGCCg -3'
miRNA:   3'- -UGCuuUUUUG-UCUGGuCGCC------GGCCGG- -5'
5794 3' -53.2 NC_001806.1 + 3347 0.74 0.652366
Target:  5'- cGCGggGGgcuGGCGGGCCGGgcccCGGCCaGCCc -3'
miRNA:   3'- -UGCuuUU---UUGUCUGGUC----GCCGGcCGG- -5'
5794 3' -53.2 NC_001806.1 + 3442 0.8 0.331888
Target:  5'- gGCGGccAGGCAcucgacGGCCAcGCGGCCGGCCu -3'
miRNA:   3'- -UGCUuuUUUGU------CUGGU-CGCCGGCCGG- -5'
5794 3' -53.2 NC_001806.1 + 3544 0.71 0.792141
Target:  5'- -gGggGAGGCGGGCgCGGCGGaCaGCCg -3'
miRNA:   3'- ugCuuUUUUGUCUG-GUCGCCgGcCGG- -5'
5794 3' -53.2 NC_001806.1 + 3811 0.78 0.432535
Target:  5'- cGCGugcgc-CAGGCCccagccgaAGCGGCCGGCCg -3'
miRNA:   3'- -UGCuuuuuuGUCUGG--------UCGCCGGCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.