miRNA display CGI


Results 1 - 20 of 99 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5803 3' -61.1 NC_001806.1 + 75183 0.66 0.671218
Target:  5'- ---cGCCGUCGCaACGGCagacccugcguCGACGGUGg -3'
miRNA:   3'- cuacCGGCGGCGcUGCCG-----------GCUGCUAC- -5'
5803 3' -61.1 NC_001806.1 + 130500 0.66 0.710076
Target:  5'- --aGGCCGCCGaGACGGagGA-GGUGg -3'
miRNA:   3'- cuaCCGGCGGCgCUGCCggCUgCUAC- -5'
5803 3' -61.1 NC_001806.1 + 3804 0.66 0.710076
Target:  5'- --cGGCCGCCGCGuGCGccaggccccaGCCGaaGCGGc- -3'
miRNA:   3'- cuaCCGGCGGCGC-UGC----------CGGC--UGCUac -5'
5803 3' -61.1 NC_001806.1 + 76639 0.66 0.671218
Target:  5'- aGGUGGUCGCCgucccgGCGACcguGGCCaaGACGcUGg -3'
miRNA:   3'- -CUACCGGCGG------CGCUG---CCGG--CUGCuAC- -5'
5803 3' -61.1 NC_001806.1 + 61594 0.66 0.689766
Target:  5'- --aGGCCGUCGUGugcACGGCCucgucccGGCuGAUGa -3'
miRNA:   3'- cuaCCGGCGGCGC---UGCCGG-------CUG-CUAC- -5'
5803 3' -61.1 NC_001806.1 + 2653 0.66 0.680996
Target:  5'- --aGGCCuCCaggGCGGCGGCCG-CGGg- -3'
miRNA:   3'- cuaCCGGcGG---CGCUGCCGGCuGCUac -5'
5803 3' -61.1 NC_001806.1 + 87554 0.66 0.690738
Target:  5'- ---cGCCaaGCgCGCGACGGCCGAgagcuccaGAUGg -3'
miRNA:   3'- cuacCGG--CG-GCGCUGCCGGCUg-------CUAC- -5'
5803 3' -61.1 NC_001806.1 + 147813 0.66 0.690738
Target:  5'- cAUGGgCGCCGCgGGgGGCCuGugGGg- -3'
miRNA:   3'- cUACCgGCGGCG-CUgCCGG-CugCUac -5'
5803 3' -61.1 NC_001806.1 + 76819 0.66 0.680996
Target:  5'- --cGGCCaGCgGCGACGGCCcgGGCc--- -3'
miRNA:   3'- cuaCCGG-CGgCGCUGCCGG--CUGcuac -5'
5803 3' -61.1 NC_001806.1 + 128038 0.66 0.670239
Target:  5'- --aGGCCGacgaugcCCGUGGCGGCC-ACGGc- -3'
miRNA:   3'- cuaCCGGC-------GGCGCUGCCGGcUGCUac -5'
5803 3' -61.1 NC_001806.1 + 41600 0.66 0.719657
Target:  5'- --cGGauaagCGCCGCGAUcGCCGGgGGUGu -3'
miRNA:   3'- cuaCCg----GCGGCGCUGcCGGCUgCUAC- -5'
5803 3' -61.1 NC_001806.1 + 73126 0.66 0.680996
Target:  5'- --cGGUCGCCGaGGCGGgCGAgGAc- -3'
miRNA:   3'- cuaCCGGCGGCgCUGCCgGCUgCUac -5'
5803 3' -61.1 NC_001806.1 + 100321 0.66 0.690738
Target:  5'- --gGGgCGCgGC-AUGGCCGGCGAc- -3'
miRNA:   3'- cuaCCgGCGgCGcUGCCGGCUGCUac -5'
5803 3' -61.1 NC_001806.1 + 24640 0.66 0.710076
Target:  5'- --gGGCgCGCCGCuGCGGCCcguguacguGGCGcUGg -3'
miRNA:   3'- cuaCCG-GCGGCGcUGCCGG---------CUGCuAC- -5'
5803 3' -61.1 NC_001806.1 + 42720 0.66 0.680996
Target:  5'- cGUGGCCuCCGCGuccAgGGUggCGGCGAUGu -3'
miRNA:   3'- cUACCGGcGGCGC---UgCCG--GCUGCUAC- -5'
5803 3' -61.1 NC_001806.1 + 86669 0.66 0.680996
Target:  5'- --cGGCgGCCGUGA-GGCCG-CGGc- -3'
miRNA:   3'- cuaCCGgCGGCGCUgCCGGCuGCUac -5'
5803 3' -61.1 NC_001806.1 + 133089 0.66 0.678067
Target:  5'- aAUGGCCGCCgucuGCcugcagaucgaggaGACGGCCagcuCGGUGa -3'
miRNA:   3'- cUACCGGCGG----CG--------------CUGCCGGcu--GCUAC- -5'
5803 3' -61.1 NC_001806.1 + 51103 0.66 0.700433
Target:  5'- aGggGGCCGCCGCccuGCGGgCGcACG-UGu -3'
miRNA:   3'- -CuaCCGGCGGCGc--UGCCgGC-UGCuAC- -5'
5803 3' -61.1 NC_001806.1 + 4328 0.66 0.700433
Target:  5'- --cGGCCaccGCCGCG-CGGgcCCGGCGGc- -3'
miRNA:   3'- cuaCCGG---CGGCGCuGCC--GGCUGCUac -5'
5803 3' -61.1 NC_001806.1 + 86396 0.66 0.690738
Target:  5'- --cGGCUaaCGCGGCGGCCgcuccggaGACGGUa -3'
miRNA:   3'- cuaCCGGcgGCGCUGCCGG--------CUGCUAc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.