miRNA display CGI


Results 1 - 20 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5803 3' -61.1 NC_001806.1 + 1715 0.68 0.56331
Target:  5'- --aGGCCGCCGCc-CGGCCGuccaGCGccGg -3'
miRNA:   3'- cuaCCGGCGGCGcuGCCGGC----UGCuaC- -5'
5803 3' -61.1 NC_001806.1 + 2074 0.67 0.622036
Target:  5'- cGAUGaGCCGCCGgucgcCGGCG-CUGGCGAg- -3'
miRNA:   3'- -CUAC-CGGCGGC-----GCUGCcGGCUGCUac -5'
5803 3' -61.1 NC_001806.1 + 2500 0.66 0.710076
Target:  5'- ---cGCCGCCGCacGCGGCCugGGCGGc- -3'
miRNA:   3'- cuacCGGCGGCGc-UGCCGG--CUGCUac -5'
5803 3' -61.1 NC_001806.1 + 2653 0.66 0.680996
Target:  5'- --aGGCCuCCaggGCGGCGGCCG-CGGg- -3'
miRNA:   3'- cuaCCGGcGG---CGCUGCCGGCuGCUac -5'
5803 3' -61.1 NC_001806.1 + 2741 0.68 0.592553
Target:  5'- gGcgGGCCGgCGCGAcaCGGCC-ACGGg- -3'
miRNA:   3'- -CuaCCGGCgGCGCU--GCCGGcUGCUac -5'
5803 3' -61.1 NC_001806.1 + 2773 0.71 0.408751
Target:  5'- gGcgGGCCugcGCCGCGGCGGCCcggGGCGc-- -3'
miRNA:   3'- -CuaCCGG---CGGCGCUGCCGG---CUGCuac -5'
5803 3' -61.1 NC_001806.1 + 2925 0.74 0.270897
Target:  5'- cGcgGGCCGCCGCcuccgGGCGGCCGGgcCGGg- -3'
miRNA:   3'- -CuaCCGGCGGCG-----CUGCCGGCU--GCUac -5'
5803 3' -61.1 NC_001806.1 + 3086 0.68 0.602362
Target:  5'- --aGGuCCGCgGCGGCGGCgGcCGcgGa -3'
miRNA:   3'- cuaCC-GGCGgCGCUGCCGgCuGCuaC- -5'
5803 3' -61.1 NC_001806.1 + 3633 0.7 0.451636
Target:  5'- --cGGCgGCgGCGACGG-CGGCGAc- -3'
miRNA:   3'- cuaCCGgCGgCGCUGCCgGCUGCUac -5'
5803 3' -61.1 NC_001806.1 + 3804 0.66 0.710076
Target:  5'- --cGGCCGCCGCGuGCGccaggccccaGCCGaaGCGGc- -3'
miRNA:   3'- cuaCCGGCGGCGC-UGC----------CGGC--UGCUac -5'
5803 3' -61.1 NC_001806.1 + 4073 0.67 0.612192
Target:  5'- --cGGCCGCCGgGGCGcCCGAggccuCGAa- -3'
miRNA:   3'- cuaCCGGCGGCgCUGCcGGCU-----GCUac -5'
5803 3' -61.1 NC_001806.1 + 4328 0.66 0.700433
Target:  5'- --cGGCCaccGCCGCG-CGGgcCCGGCGGc- -3'
miRNA:   3'- cuaCCGG---CGGCGCuGCC--GGCUGCUac -5'
5803 3' -61.1 NC_001806.1 + 4639 0.69 0.534466
Target:  5'- --cGGCCGugacgacgucuCCGCGGCggcugGGCCGGCGGg- -3'
miRNA:   3'- cuaCCGGC-----------GGCGCUG-----CCGGCUGCUac -5'
5803 3' -61.1 NC_001806.1 + 16488 0.69 0.534466
Target:  5'- gGggGGCuUGCCGCcGCGGCUGAUGGc- -3'
miRNA:   3'- -CuaCCG-GCGGCGcUGCCGGCUGCUac -5'
5803 3' -61.1 NC_001806.1 + 21300 0.71 0.434181
Target:  5'- --gGGCCcCCGCGGCGggcaccgacGCCGGCGAg- -3'
miRNA:   3'- cuaCCGGcGGCGCUGC---------CGGCUGCUac -5'
5803 3' -61.1 NC_001806.1 + 21600 0.67 0.661411
Target:  5'- ---aGCCGCCGCGgagacgucgucACGGCCGgugGCGGc- -3'
miRNA:   3'- cuacCGGCGGCGC-----------UGCCGGC---UGCUac -5'
5803 3' -61.1 NC_001806.1 + 21930 0.72 0.3685
Target:  5'- cGGUGGCCgGCCGCGACG-CC-ACGGg- -3'
miRNA:   3'- -CUACCGG-CGGCGCUGCcGGcUGCUac -5'
5803 3' -61.1 NC_001806.1 + 22457 0.72 0.3685
Target:  5'- --cGGCCGCCGUGGCcaugaGCCGcCGAUa -3'
miRNA:   3'- cuaCCGGCGGCGCUGc----CGGCuGCUAc -5'
5803 3' -61.1 NC_001806.1 + 22790 0.72 0.37633
Target:  5'- --aGGCCgGCCGCG-UGGCCGuCGAg- -3'
miRNA:   3'- cuaCCGG-CGGCGCuGCCGGCuGCUac -5'
5803 3' -61.1 NC_001806.1 + 23068 0.71 0.425602
Target:  5'- --aGGCCGCCGUGGCcGCCGuGCGcgccGUGa -3'
miRNA:   3'- cuaCCGGCGGCGCUGcCGGC-UGC----UAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.