miRNA display CGI


Results 1 - 20 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5803 3' -61.1 NC_001806.1 + 134974 0.78 0.145701
Target:  5'- --cGGCCGUCGCGGCGGCCauccCGGUGc -3'
miRNA:   3'- cuaCCGGCGGCGCUGCCGGcu--GCUAC- -5'
5803 3' -61.1 NC_001806.1 + 150671 0.77 0.186031
Target:  5'- --gGGCCccGCCGCGcugGCGGCCGcCGAUGg -3'
miRNA:   3'- cuaCCGG--CGGCGC---UGCCGGCuGCUAC- -5'
5803 3' -61.1 NC_001806.1 + 131868 0.76 0.204756
Target:  5'- --aGGCCGUCGUGGCGGCCGcccgcgccGCGAc- -3'
miRNA:   3'- cuaCCGGCGGCGCUGCCGGC--------UGCUac -5'
5803 3' -61.1 NC_001806.1 + 103804 0.76 0.209686
Target:  5'- gGcgGcGCCGCCGCGGCGG-CGACGGg- -3'
miRNA:   3'- -CuaC-CGGCGGCGCUGCCgGCUGCUac -5'
5803 3' -61.1 NC_001806.1 + 23316 0.75 0.230438
Target:  5'- --cGGCCGCCcggagGCGGCGGCCcGCGAc- -3'
miRNA:   3'- cuaCCGGCGG-----CGCUGCCGGcUGCUac -5'
5803 3' -61.1 NC_001806.1 + 23749 0.75 0.241449
Target:  5'- --aGGCCGCgUGCGGCGGCggCGACGAc- -3'
miRNA:   3'- cuaCCGGCG-GCGCUGCCG--GCUGCUac -5'
5803 3' -61.1 NC_001806.1 + 33783 0.75 0.253479
Target:  5'- --cGGCCGCCGUGuucggucucgguagcCGGCCGGCGGg- -3'
miRNA:   3'- cuaCCGGCGGCGCu--------------GCCGGCUGCUac -5'
5803 3' -61.1 NC_001806.1 + 89269 0.74 0.270897
Target:  5'- -cUGGCU-CCGCGAgGGCCGGCGGg- -3'
miRNA:   3'- cuACCGGcGGCGCUgCCGGCUGCUac -5'
5803 3' -61.1 NC_001806.1 + 2925 0.74 0.270897
Target:  5'- cGcgGGCCGCCGCcuccgGGCGGCCGGgcCGGg- -3'
miRNA:   3'- -CuaCCGGCGGCG-----CUGCCGGCU--GCUac -5'
5803 3' -61.1 NC_001806.1 + 24869 0.74 0.283462
Target:  5'- -cUGGCgGCgGCGGgGGCCGugGAg- -3'
miRNA:   3'- cuACCGgCGgCGCUgCCGGCugCUac -5'
5803 3' -61.1 NC_001806.1 + 95035 0.73 0.309965
Target:  5'- --aGGagaCCGCCGCGGUGGCCGugGAa- -3'
miRNA:   3'- cuaCC---GGCGGCGCUGCCGGCugCUac -5'
5803 3' -61.1 NC_001806.1 + 56635 0.73 0.316879
Target:  5'- -cUGGCCGgUGCGAccucauCGGCCGGCGGc- -3'
miRNA:   3'- cuACCGGCgGCGCU------GCCGGCUGCUac -5'
5803 3' -61.1 NC_001806.1 + 84861 0.72 0.360017
Target:  5'- --cGGCgGUCGCGcuccucuGCGGCCGGCGGg- -3'
miRNA:   3'- cuaCCGgCGGCGC-------UGCCGGCUGCUac -5'
5803 3' -61.1 NC_001806.1 + 21930 0.72 0.3685
Target:  5'- cGGUGGCCgGCCGCGACG-CC-ACGGg- -3'
miRNA:   3'- -CUACCGG-CGGCGCUGCcGGcUGCUac -5'
5803 3' -61.1 NC_001806.1 + 22457 0.72 0.3685
Target:  5'- --cGGCCGCCGUGGCcaugaGCCGcCGAUa -3'
miRNA:   3'- cuaCCGGCGGCGCUGc----CGGCuGCUAc -5'
5803 3' -61.1 NC_001806.1 + 119747 0.72 0.3685
Target:  5'- -cUGGCCgGCgGCGACGGCCGGa---- -3'
miRNA:   3'- cuACCGG-CGgCGCUGCCGGCUgcuac -5'
5803 3' -61.1 NC_001806.1 + 22790 0.72 0.37633
Target:  5'- --aGGCCgGCCGCG-UGGCCGuCGAg- -3'
miRNA:   3'- cuaCCGG-CGGCGCuGCCGGCuGCUac -5'
5803 3' -61.1 NC_001806.1 + 52977 0.71 0.392323
Target:  5'- aGAUGGaaGCCacguaucUGACGGCCGACGAc- -3'
miRNA:   3'- -CUACCggCGGc------GCUGCCGGCUGCUac -5'
5803 3' -61.1 NC_001806.1 + 2773 0.71 0.408751
Target:  5'- gGcgGGCCugcGCCGCGGCGGCCcggGGCGc-- -3'
miRNA:   3'- -CuaCCGG---CGGCGCUGCCGG---CUGCuac -5'
5803 3' -61.1 NC_001806.1 + 134932 0.71 0.408751
Target:  5'- cGAUGGCCuGCUugaggaugGUGGCGGCCGACc--- -3'
miRNA:   3'- -CUACCGG-CGG--------CGCUGCCGGCUGcuac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.