Results 1 - 20 of 103 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5824 | 5' | -62 | NC_001806.1 | + | 1472 | 0.76 | 0.199364 |
Target: 5'- cGUCGUCGCCGcgcagcaccAGCGGGGgGGCgUCGUCg -3' miRNA: 3'- -CAGCAGCGGC---------UCGCCCUgCUG-GGCGG- -5' |
|||||||
5824 | 5' | -62 | NC_001806.1 | + | 5146 | 0.76 | 0.204096 |
Target: 5'- -aCGccaUCGCCGAuGCGGGGCGAUCCuCCg -3' miRNA: 3'- caGC---AGCGGCU-CGCCCUGCUGGGcGG- -5' |
|||||||
5824 | 5' | -62 | NC_001806.1 | + | 33800 | 0.75 | 0.251195 |
Target: 5'- cUCGguaGCCGgccGGCGGGugGACUCGCg -3' miRNA: 3'- cAGCag-CGGC---UCGCCCugCUGGGCGg -5' |
|||||||
5824 | 5' | -62 | NC_001806.1 | + | 51130 | 0.74 | 0.287339 |
Target: 5'- uGUCGgggaggcgcgCGaCCGGGCuGGGA-GGCCCGCCa -3' miRNA: 3'- -CAGCa---------GC-GGCUCG-CCCUgCUGGGCGG- -5' |
|||||||
5824 | 5' | -62 | NC_001806.1 | + | 5069 | 0.74 | 0.287339 |
Target: 5'- cUCGUCGCgGucugggcucggGGUGGGcgGCGGCCCGUCg -3' miRNA: 3'- cAGCAGCGgC-----------UCGCCC--UGCUGGGCGG- -5' |
|||||||
5824 | 5' | -62 | NC_001806.1 | + | 49699 | 0.74 | 0.274855 |
Target: 5'- --gGUUGCCGuGUGGGACGAguccgugcgcUCCGCCc -3' miRNA: 3'- cagCAGCGGCuCGCCCUGCU----------GGGCGG- -5' |
|||||||
5824 | 5' | -62 | NC_001806.1 | + | 101480 | 0.74 | 0.268777 |
Target: 5'- ----cCGCCGGGcCGGGACuggaGCCCGCCg -3' miRNA: 3'- cagcaGCGGCUC-GCCCUGc---UGGGCGG- -5' |
|||||||
5824 | 5' | -62 | NC_001806.1 | + | 66814 | 0.73 | 0.327455 |
Target: 5'- -----gGCCGAGCGGGGcCGGCCCgggugGCCg -3' miRNA: 3'- cagcagCGGCUCGCCCU-GCUGGG-----CGG- -5' |
|||||||
5824 | 5' | -62 | NC_001806.1 | + | 24078 | 0.73 | 0.313637 |
Target: 5'- uGUCGgCGCUGGGCGcacaGGGCGugCUGCUg -3' miRNA: 3'- -CAGCaGCGGCUCGC----CCUGCugGGCGG- -5' |
|||||||
5824 | 5' | -62 | NC_001806.1 | + | 23629 | 0.73 | 0.313637 |
Target: 5'- -cCGUgGCCGAGCucacGGACcACCCGCUg -3' miRNA: 3'- caGCAgCGGCUCGc---CCUGcUGGGCGG- -5' |
|||||||
5824 | 5' | -62 | NC_001806.1 | + | 23708 | 0.73 | 0.306896 |
Target: 5'- cUCGaUCGCCGcGCGGuGCGccggGCCCGCCc -3' miRNA: 3'- cAGC-AGCGGCuCGCCcUGC----UGGGCGG- -5' |
|||||||
5824 | 5' | -62 | NC_001806.1 | + | 78915 | 0.73 | 0.293747 |
Target: 5'- cUCaUCGCCGAGCGGccccucgcccGgGGCCCGCCg -3' miRNA: 3'- cAGcAGCGGCUCGCCc---------UgCUGGGCGG- -5' |
|||||||
5824 | 5' | -62 | NC_001806.1 | + | 45272 | 0.73 | 0.293747 |
Target: 5'- cUCGUCGCCuuagcGGCGGGAgacgcgGGCCCGCg -3' miRNA: 3'- cAGCAGCGGc----UCGCCCUg-----CUGGGCGg -5' |
|||||||
5824 | 5' | -62 | NC_001806.1 | + | 20121 | 0.72 | 0.370802 |
Target: 5'- cGUCGgucgCGCCGGGCcuuuaugugcgccGGaGA-GACCCGCCc -3' miRNA: 3'- -CAGCa---GCGGCUCG-------------CC-CUgCUGGGCGG- -5' |
|||||||
5824 | 5' | -62 | NC_001806.1 | + | 3528 | 0.71 | 0.40315 |
Target: 5'- gGUCGUCGCCccccgcggggGAgGCGGGcGCGGCggacagCCGCCc -3' miRNA: 3'- -CAGCAGCGG----------CU-CGCCC-UGCUG------GGCGG- -5' |
|||||||
5824 | 5' | -62 | NC_001806.1 | + | 22877 | 0.71 | 0.395096 |
Target: 5'- -cCGUC-CCGGGgcuggcCGGGGCccGGCCCGCCa -3' miRNA: 3'- caGCAGcGGCUC------GCCCUG--CUGGGCGG- -5' |
|||||||
5824 | 5' | -62 | NC_001806.1 | + | 100383 | 0.71 | 0.387148 |
Target: 5'- -cCGUCGCCGGGCGGcgcGGgGGCCggggUGCCc -3' miRNA: 3'- caGCAGCGGCUCGCC---CUgCUGG----GCGG- -5' |
|||||||
5824 | 5' | -62 | NC_001806.1 | + | 38692 | 0.71 | 0.379305 |
Target: 5'- cUCGUucCGCCccccGGGCGGGGCc-CCCGCCc -3' miRNA: 3'- cAGCA--GCGG----CUCGCCCUGcuGGGCGG- -5' |
|||||||
5824 | 5' | -62 | NC_001806.1 | + | 147653 | 0.71 | 0.379305 |
Target: 5'- -gCGUcCGCgGGGCGGG-CGGCCgGCUc -3' miRNA: 3'- caGCA-GCGgCUCGCCCuGCUGGgCGG- -5' |
|||||||
5824 | 5' | -62 | NC_001806.1 | + | 23967 | 0.71 | 0.411306 |
Target: 5'- aGUgGUcCGCCGAGCGcGGCGGgcuguCCUGCCu -3' miRNA: 3'- -CAgCA-GCGGCUCGCcCUGCU-----GGGCGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home