miRNA display CGI


Results 1 - 20 of 263 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5827 3' -61.7 NC_001806.1 + 83794 0.65 0.696726
Target:  5'- aCCUugGCcuccgggggcgaggAGGGgGCGGgGUCGgCGCGg -3'
miRNA:   3'- -GGGugCG--------------UUCCgCGUCgCGGCgGUGC- -5'
5827 3' -61.7 NC_001806.1 + 119138 0.66 0.659741
Target:  5'- -aCGCGCAucauGCGCGucugucggcauuuGUGCCGCUACGu -3'
miRNA:   3'- ggGUGCGUuc--CGCGU-------------CGCGGCGGUGC- -5'
5827 3' -61.7 NC_001806.1 + 50644 0.66 0.64798
Target:  5'- gCCCGggcgUGCGGGGaCGCgcaccGGCGCCgggacgacgcggcgGCCACGc -3'
miRNA:   3'- -GGGU----GCGUUCC-GCG-----UCGCGG--------------CGGUGC- -5'
5827 3' -61.7 NC_001806.1 + 45300 0.66 0.641111
Target:  5'- gCCCGCGCGGGGa-----GCCGCC-CGg -3'
miRNA:   3'- -GGGUGCGUUCCgcgucgCGGCGGuGC- -5'
5827 3' -61.7 NC_001806.1 + 94949 0.66 0.660719
Target:  5'- gCUCGCGUccGGCGaCcGCGCCgGCCAg- -3'
miRNA:   3'- -GGGUGCGuuCCGC-GuCGCGG-CGGUgc -5'
5827 3' -61.7 NC_001806.1 + 109479 0.66 0.650922
Target:  5'- gCUgGCGUggGGCGgGGaUGCCGUCAa- -3'
miRNA:   3'- -GGgUGCGuuCCGCgUC-GCGGCGGUgc -5'
5827 3' -61.7 NC_001806.1 + 62743 0.66 0.641111
Target:  5'- --aGCGUguuGGGGCGCAGCGUcuCGCCGu- -3'
miRNA:   3'- gggUGCG---UUCCGCGUCGCG--GCGGUgc -5'
5827 3' -61.7 NC_001806.1 + 62541 0.66 0.650922
Target:  5'- gUCgACGUAggGGGCGCGGU-CCGCaCACa -3'
miRNA:   3'- -GGgUGCGU--UCCGCGUCGcGGCG-GUGc -5'
5827 3' -61.7 NC_001806.1 + 109407 0.66 0.650922
Target:  5'- aCCCGgcgauggguCGUggGGCGCGGCGgcCCGUgAUa -3'
miRNA:   3'- -GGGU---------GCGuuCCGCGUCGC--GGCGgUGc -5'
5827 3' -61.7 NC_001806.1 + 147432 0.66 0.650922
Target:  5'- aCCCGCGCcucuuccucGGaCGCAcCGCCGCCu-- -3'
miRNA:   3'- -GGGUGCGuu-------CC-GCGUcGCGGCGGugc -5'
5827 3' -61.7 NC_001806.1 + 75625 0.66 0.650922
Target:  5'- gCCACGCGAcgccGCGCcgacgaacuugAG-GCCGCCACc -3'
miRNA:   3'- gGGUGCGUUc---CGCG-----------UCgCGGCGGUGc -5'
5827 3' -61.7 NC_001806.1 + 108195 0.66 0.660719
Target:  5'- cUCUGCGCuGGGCGUGGUuaugauuaccGCCGCCcUGg -3'
miRNA:   3'- -GGGUGCGuUCCGCGUCG----------CGGCGGuGC- -5'
5827 3' -61.7 NC_001806.1 + 30733 0.66 0.650922
Target:  5'- aCCCcCGCGGGGgcCGCcucuucCGCCGCCGgGg -3'
miRNA:   3'- -GGGuGCGUUCC--GCGuc----GCGGCGGUgC- -5'
5827 3' -61.7 NC_001806.1 + 25875 0.66 0.650922
Target:  5'- cCCCcCGC-GGGCGCGcGCGCgCGCaaaaaagGCGg -3'
miRNA:   3'- -GGGuGCGuUCCGCGU-CGCG-GCGg------UGC- -5'
5827 3' -61.7 NC_001806.1 + 1479 0.66 0.659741
Target:  5'- gCCGCGCAGcaccagcGGgGgGGCGUCGUCGuCGg -3'
miRNA:   3'- gGGUGCGUU-------CCgCgUCGCGGCGGU-GC- -5'
5827 3' -61.7 NC_001806.1 + 72579 0.66 0.650922
Target:  5'- gCCCACaGCc--GCcCAGuCGCCGCCACc -3'
miRNA:   3'- -GGGUG-CGuucCGcGUC-GCGGCGGUGc -5'
5827 3' -61.7 NC_001806.1 + 106890 0.66 0.654843
Target:  5'- gCCCGCGCcccccucucuucuGGCGCcuaacGGgGCUGCuCGCGa -3'
miRNA:   3'- -GGGUGCGuu-----------CCGCG-----UCgCGGCG-GUGC- -5'
5827 3' -61.7 NC_001806.1 + 89311 0.66 0.645037
Target:  5'- gCCCugGCcgccgacuuuccuccGGGGgacaGCGGgcCGCCGCCACc -3'
miRNA:   3'- -GGGugCG---------------UUCCg---CGUC--GCGGCGGUGc -5'
5827 3' -61.7 NC_001806.1 + 136683 0.66 0.660719
Target:  5'- aCCAgcCGuUggGGCuGCAGaccgcggGCCGCCACGu -3'
miRNA:   3'- gGGU--GC-GuuCCG-CGUCg------CGGCGGUGC- -5'
5827 3' -61.7 NC_001806.1 + 135592 0.66 0.650922
Target:  5'- gCCGCGCGcugcuGGCGCuccAGgGCCcCCGCu -3'
miRNA:   3'- gGGUGCGUu----CCGCG---UCgCGGcGGUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.