miRNA display CGI


Results 1 - 20 of 263 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5827 3' -61.7 NC_001806.1 + 315 0.74 0.265327
Target:  5'- cCCCACGCccgccGCGCGcGCGCaCGCCGCc -3'
miRNA:   3'- -GGGUGCGuuc--CGCGU-CGCG-GCGGUGc -5'
5827 3' -61.7 NC_001806.1 + 380 0.74 0.259337
Target:  5'- gCCCGCGgGGGGCcCGG-GCUGCCACa -3'
miRNA:   3'- -GGGUGCgUUCCGcGUCgCGGCGGUGc -5'
5827 3' -61.7 NC_001806.1 + 1383 0.66 0.689954
Target:  5'- cCCCGcCGCcgccaGCaCGGUGCCGCUGCGg -3'
miRNA:   3'- -GGGU-GCGuuc--CGcGUCGCGGCGGUGC- -5'
5827 3' -61.7 NC_001806.1 + 1479 0.66 0.659741
Target:  5'- gCCGCGCAGcaccagcGGgGgGGCGUCGUCGuCGg -3'
miRNA:   3'- gGGUGCGUU-------CCgCgUCGCGGCGGU-GC- -5'
5827 3' -61.7 NC_001806.1 + 1550 0.67 0.582348
Target:  5'- gCCCGCGCcaccGGGC-CGG-GCCGgCGCGc -3'
miRNA:   3'- -GGGUGCGu---UCCGcGUCgCGGCgGUGC- -5'
5827 3' -61.7 NC_001806.1 + 1597 0.68 0.543744
Target:  5'- gCCACGUAcacGGGcCGCAGCGgCgCGCC-Ca -3'
miRNA:   3'- gGGUGCGU---UCC-GCGUCGC-G-GCGGuGc -5'
5827 3' -61.7 NC_001806.1 + 1678 0.67 0.610687
Target:  5'- uCCgGCGCGccGGGCGCcauggcgucgguGGUccccgagGCCGCCGCc -3'
miRNA:   3'- -GGgUGCGU--UCCGCG------------UCG-------CGGCGGUGc -5'
5827 3' -61.7 NC_001806.1 + 1830 0.76 0.191195
Target:  5'- gCCGCgGCAcAGGCGCAGCGgCGgCGCGu -3'
miRNA:   3'- gGGUG-CGU-UCCGCGUCGCgGCgGUGC- -5'
5827 3' -61.7 NC_001806.1 + 1948 0.69 0.487567
Target:  5'- uCCCGCGCcgccGGC-CAGCGCaCGgCGCa -3'
miRNA:   3'- -GGGUGCGuu--CCGcGUCGCG-GCgGUGc -5'
5827 3' -61.7 NC_001806.1 + 1997 0.68 0.524749
Target:  5'- -gCACGCcAGGUagGC-GUGCUGCCGCGa -3'
miRNA:   3'- ggGUGCGuUCCG--CGuCGCGGCGGUGC- -5'
5827 3' -61.7 NC_001806.1 + 2044 0.67 0.592097
Target:  5'- gCCAguCGCAGGcGCGCacGGUGuuGaCCACGa -3'
miRNA:   3'- gGGU--GCGUUC-CGCG--UCGCggC-GGUGC- -5'
5827 3' -61.7 NC_001806.1 + 2409 0.66 0.689954
Target:  5'- gCCAUGC--GGCGCAGCGggcCCGaggCGCGc -3'
miRNA:   3'- gGGUGCGuuCCGCGUCGC---GGCg--GUGC- -5'
5827 3' -61.7 NC_001806.1 + 2534 0.67 0.611667
Target:  5'- cCCgGCGCAccGCGCGGCGaucgagGCCAgGg -3'
miRNA:   3'- -GGgUGCGUucCGCGUCGCgg----CGGUgC- -5'
5827 3' -61.7 NC_001806.1 + 2637 0.68 0.540879
Target:  5'- -gCGCGCGGGGaGCAGUaggccuccagggcgGCgGCCGCGg -3'
miRNA:   3'- ggGUGCGUUCCgCGUCG--------------CGgCGGUGC- -5'
5827 3' -61.7 NC_001806.1 + 2746 0.74 0.259337
Target:  5'- gCCgGCGCGacacggccacgGGGCGCGggcgggccuGCGCCGCgGCGg -3'
miRNA:   3'- -GGgUGCGU-----------UCCGCGU---------CGCGGCGgUGC- -5'
5827 3' -61.7 NC_001806.1 + 2982 0.73 0.29041
Target:  5'- uCCCGCgGCGcggggAGGCgGCGGCgGCCGCCAgCGc -3'
miRNA:   3'- -GGGUG-CGU-----UCCG-CGUCG-CGGCGGU-GC- -5'
5827 3' -61.7 NC_001806.1 + 3023 0.67 0.611667
Target:  5'- gCgGCGUccGGUGCgcuGGcCGCCGCCGCc -3'
miRNA:   3'- gGgUGCGuuCCGCG---UC-GCGGCGGUGc -5'
5827 3' -61.7 NC_001806.1 + 3161 0.66 0.689954
Target:  5'- aCCAgGCucacGGCGC-GCacgGCgGCCACGg -3'
miRNA:   3'- gGGUgCGuu--CCGCGuCG---CGgCGGUGC- -5'
5827 3' -61.7 NC_001806.1 + 3222 0.8 0.108504
Target:  5'- cCCCGCGC-AGGCGCAugagcaccagcGCGUCGCgCACGa -3'
miRNA:   3'- -GGGUGCGuUCCGCGU-----------CGCGGCG-GUGC- -5'
5827 3' -61.7 NC_001806.1 + 3276 0.71 0.391744
Target:  5'- gCCACGCGcgcAGGCGgGGCGCgucggcgUGCgGCGg -3'
miRNA:   3'- gGGUGCGU---UCCGCgUCGCG-------GCGgUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.