miRNA display CGI


Results 1 - 20 of 263 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5827 3' -61.7 NC_001806.1 + 126551 0.82 0.074075
Target:  5'- gCCCACGCcucgggcgaaaaAAGGCGguGCuCCGCCGCGg -3'
miRNA:   3'- -GGGUGCG------------UUCCGCguCGcGGCGGUGC- -5'
5827 3' -61.7 NC_001806.1 + 91183 0.8 0.103165
Target:  5'- gCCCGCGCcaacgccgucGGGGCGUaccuGGCGCgCGCCGCGg -3'
miRNA:   3'- -GGGUGCG----------UUCCGCG----UCGCG-GCGGUGC- -5'
5827 3' -61.7 NC_001806.1 + 3222 0.8 0.108504
Target:  5'- cCCCGCGC-AGGCGCAugagcaccagcGCGUCGCgCACGa -3'
miRNA:   3'- -GGGUGCGuUCCGCGU-----------CGCGGCG-GUGC- -5'
5827 3' -61.7 NC_001806.1 + 21750 0.79 0.12929
Target:  5'- aCgCACGCGAGGCGCGG-GCCGUCggGCGg -3'
miRNA:   3'- -GgGUGCGUUCCGCGUCgCGGCGG--UGC- -5'
5827 3' -61.7 NC_001806.1 + 151143 0.78 0.146331
Target:  5'- gCCCGCGCGucgcAGGCGCAG-GCgCGCCAgGu -3'
miRNA:   3'- -GGGUGCGU----UCCGCGUCgCG-GCGGUgC- -5'
5827 3' -61.7 NC_001806.1 + 3461 0.78 0.149976
Target:  5'- gCCACGCGgccggccuGGGCGCGGCGCC-CgGCGu -3'
miRNA:   3'- gGGUGCGU--------UCCGCGUCGCGGcGgUGC- -5'
5827 3' -61.7 NC_001806.1 + 102998 0.77 0.153328
Target:  5'- cCCCGCGCGcGGCauccgccucuucgGCGGCgGCCGCCGCc -3'
miRNA:   3'- -GGGUGCGUuCCG-------------CGUCG-CGGCGGUGc -5'
5827 3' -61.7 NC_001806.1 + 88965 0.77 0.165396
Target:  5'- gUCCACGCcgccccacAGGCGCgAGCGCCGCgGCc -3'
miRNA:   3'- -GGGUGCGu-------UCCGCG-UCGCGGCGgUGc -5'
5827 3' -61.7 NC_001806.1 + 148153 0.77 0.169468
Target:  5'- gUCACGgGGGGCGCGGCGgCGCCucuGCGu -3'
miRNA:   3'- gGGUGCgUUCCGCGUCGCgGCGG---UGC- -5'
5827 3' -61.7 NC_001806.1 + 22635 0.77 0.173209
Target:  5'- aCCGgGCGAGcGCGCGGUGCCcgccggguacggcGCCGCGg -3'
miRNA:   3'- gGGUgCGUUC-CGCGUCGCGG-------------CGGUGC- -5'
5827 3' -61.7 NC_001806.1 + 92914 0.76 0.177881
Target:  5'- gUCCGCGCAGGGCGgGGCGg-GCCugGa -3'
miRNA:   3'- -GGGUGCGUUCCGCgUCGCggCGGugC- -5'
5827 3' -61.7 NC_001806.1 + 48044 0.76 0.182225
Target:  5'- cUCC-CGCuGGuGCGCAGCGCgGCUACGg -3'
miRNA:   3'- -GGGuGCGuUC-CGCGUCGCGgCGGUGC- -5'
5827 3' -61.7 NC_001806.1 + 4433 0.76 0.186662
Target:  5'- gCCCGgGCGGGG-GCGGCGuCCGCC-CGg -3'
miRNA:   3'- -GGGUgCGUUCCgCGUCGC-GGCGGuGC- -5'
5827 3' -61.7 NC_001806.1 + 1830 0.76 0.191195
Target:  5'- gCCGCgGCAcAGGCGCAGCGgCGgCGCGu -3'
miRNA:   3'- gGGUG-CGU-UCCGCGUCGCgGCgGUGC- -5'
5827 3' -61.7 NC_001806.1 + 52723 0.75 0.215329
Target:  5'- gCCGCGCGGacGGCGCGGgGCCcCCGCu -3'
miRNA:   3'- gGGUGCGUU--CCGCGUCgCGGcGGUGc -5'
5827 3' -61.7 NC_001806.1 + 26899 0.75 0.220459
Target:  5'- cCCCGCGCGGGuGCGCuucuCGCC-CCACGu -3'
miRNA:   3'- -GGGUGCGUUC-CGCGuc--GCGGcGGUGC- -5'
5827 3' -61.7 NC_001806.1 + 101833 0.75 0.220459
Target:  5'- uUCCAgggcgGUGAGGCGCaccAGCGCCGCCugGc -3'
miRNA:   3'- -GGGUg----CGUUCCGCG---UCGCGGCGGugC- -5'
5827 3' -61.7 NC_001806.1 + 29790 0.75 0.220459
Target:  5'- cCCCACGCAGa----GGCGCCGCCGCGc -3'
miRNA:   3'- -GGGUGCGUUccgcgUCGCGGCGGUGC- -5'
5827 3' -61.7 NC_001806.1 + 151436 0.75 0.231032
Target:  5'- gCCCACcgGCGGGGgGCGGCggcgggGCgGCCGCGg -3'
miRNA:   3'- -GGGUG--CGUUCCgCGUCG------CGgCGGUGC- -5'
5827 3' -61.7 NC_001806.1 + 23137 0.75 0.231032
Target:  5'- aCCCGCGCcugccGAGcucCGCGGCcgccGCCGCCGCGg -3'
miRNA:   3'- -GGGUGCG-----UUCc--GCGUCG----CGGCGGUGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.