Results 1 - 20 of 26 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5830 | 3' | -61.8 | NC_001806.1 | + | 77395 | 0.66 | 0.679194 |
Target: 5'- -cGcGGCGGCCgcgCCCGCGccccuGCUCg -3' miRNA: 3'- gaC-CCGCCGGa--GGGCGCacug-UGAGa -5' |
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5830 | 3' | -61.8 | NC_001806.1 | + | 131875 | 0.66 | 0.679194 |
Target: 5'- -cGuGGCGGCCgCCCGCGccgcgacGACGC-Cg -3' miRNA: 3'- gaC-CCGCCGGaGGGCGCa------CUGUGaGa -5' |
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5830 | 3' | -61.8 | NC_001806.1 | + | 135250 | 0.66 | 0.679194 |
Target: 5'- aUGGGCGcGCCUaCCCGgGgGGCccgaagcacugACUCa -3' miRNA: 3'- gACCCGC-CGGA-GGGCgCaCUG-----------UGAGa -5' |
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5830 | 3' | -61.8 | NC_001806.1 | + | 57031 | 0.66 | 0.669403 |
Target: 5'- aCUGGGUGGCCgggCCCGgGgccggGGCccccgGCUg- -3' miRNA: 3'- -GACCCGCCGGa--GGGCgCa----CUG-----UGAga -5' |
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5830 | 3' | -61.8 | NC_001806.1 | + | 65651 | 0.66 | 0.659584 |
Target: 5'- --cGGCGGCCUCCCccuGgGUGGCuGCgCUg -3' miRNA: 3'- gacCCGCCGGAGGG---CgCACUG-UGaGA- -5' |
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5830 | 3' | -61.8 | NC_001806.1 | + | 6973 | 0.66 | 0.659584 |
Target: 5'- uCUGGGCGGaggguguuCCcCCC-CGUGGCuCUCg -3' miRNA: 3'- -GACCCGCC--------GGaGGGcGCACUGuGAGa -5' |
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5830 | 3' | -61.8 | NC_001806.1 | + | 5091 | 0.66 | 0.649744 |
Target: 5'- gUGGGCGGCggCCCGUcgGUGGgGCcCg -3' miRNA: 3'- gACCCGCCGgaGGGCG--CACUgUGaGa -5' |
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5830 | 3' | -61.8 | NC_001806.1 | + | 75979 | 0.66 | 0.649744 |
Target: 5'- aCUGGagcGCGGCCUUcggggCCGCGgccGACACg-- -3' miRNA: 3'- -GACC---CGCCGGAG-----GGCGCa--CUGUGaga -5' |
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5830 | 3' | -61.8 | NC_001806.1 | + | 50888 | 0.66 | 0.649744 |
Target: 5'- uCUGGGCGGaCUCCgCGCGgccgcgGAgCACg-- -3' miRNA: 3'- -GACCCGCCgGAGG-GCGCa-----CU-GUGaga -5' |
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5830 | 3' | -61.8 | NC_001806.1 | + | 44136 | 0.66 | 0.649744 |
Target: 5'- -gGGGgGGCCU-CCGCGUcaaACUCg -3' miRNA: 3'- gaCCCgCCGGAgGGCGCAcugUGAGa -5' |
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5830 | 3' | -61.8 | NC_001806.1 | + | 78886 | 0.66 | 0.639892 |
Target: 5'- --uGGCGGCacagCUCCCGCGccUGuccGCGCUCa -3' miRNA: 3'- gacCCGCCG----GAGGGCGC--AC---UGUGAGa -5' |
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5830 | 3' | -61.8 | NC_001806.1 | + | 93134 | 0.67 | 0.610329 |
Target: 5'- aUGGGCGGCaaaaaCGCGUGccCGCUCc -3' miRNA: 3'- gACCCGCCGgagg-GCGCACu-GUGAGa -5' |
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5830 | 3' | -61.8 | NC_001806.1 | + | 106796 | 0.67 | 0.610329 |
Target: 5'- gUGGGCGGCUaCCCGgaGgagGGCACg-- -3' miRNA: 3'- gACCCGCCGGaGGGCg-Ca--CUGUGaga -5' |
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5830 | 3' | -61.8 | NC_001806.1 | + | 140683 | 0.67 | 0.600496 |
Target: 5'- gCUGcGCGGCg-CCCGCGUGccGCGCUg- -3' miRNA: 3'- -GACcCGCCGgaGGGCGCAC--UGUGAga -5' |
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5830 | 3' | -61.8 | NC_001806.1 | + | 149804 | 0.67 | 0.600496 |
Target: 5'- -gGGGCGGCCcucaggCCgGCG-GGUACUCg -3' miRNA: 3'- gaCCCGCCGGa-----GGgCGCaCUGUGAGa -5' |
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5830 | 3' | -61.8 | NC_001806.1 | + | 21295 | 0.67 | 0.590684 |
Target: 5'- -cGGGagGGCC-CCCGCGgcgGGCAC-Cg -3' miRNA: 3'- gaCCCg-CCGGaGGGCGCa--CUGUGaGa -5' |
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5830 | 3' | -61.8 | NC_001806.1 | + | 146948 | 0.67 | 0.561442 |
Target: 5'- aUGGGCaGGCagUCCCcCGUGAUAgUCUu -3' miRNA: 3'- gACCCG-CCGg-AGGGcGCACUGUgAGA- -5' |
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5830 | 3' | -61.8 | NC_001806.1 | + | 87293 | 0.68 | 0.542166 |
Target: 5'- cCUGccGGCGGUCUCCCGCGcgcccuccGGCucccGCUCg -3' miRNA: 3'- -GAC--CCGCCGGAGGGCGCa-------CUG----UGAGa -5' |
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5830 | 3' | -61.8 | NC_001806.1 | + | 43586 | 0.68 | 0.523114 |
Target: 5'- -gGGGCGGCUgacaagUCCGCG-GAUguGCUCg -3' miRNA: 3'- gaCCCGCCGGa-----GGGCGCaCUG--UGAGa -5' |
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5830 | 3' | -61.8 | NC_001806.1 | + | 135660 | 0.69 | 0.485833 |
Target: 5'- uUGGGUcGCCaggCCCGCGUuggucucgcgcaGGCGCUCg -3' miRNA: 3'- gACCCGcCGGa--GGGCGCA------------CUGUGAGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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