Results 1 - 20 of 83 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5841 | 5' | -58 | NC_001806.1 | + | 98711 | 0.82 | 0.149345 |
Target: 5'- gUCUGUugGUCCUggcCGGCCUGGCGGCg -3' miRNA: 3'- -GGACAugCAGGGa--GCCGGGCUGCUGg -5' |
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5841 | 5' | -58 | NC_001806.1 | + | 124779 | 0.76 | 0.345689 |
Target: 5'- aCCUGUACG-CCCUgGGCCaGACGcuGCUg -3' miRNA: 3'- -GGACAUGCaGGGAgCCGGgCUGC--UGG- -5' |
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5841 | 5' | -58 | NC_001806.1 | + | 100747 | 0.75 | 0.383472 |
Target: 5'- cCCagGUGCG-CCCggacagcgcgagcUCGGCCuCGGCGGCCa -3' miRNA: 3'- -GGa-CAUGCaGGG-------------AGCCGG-GCUGCUGG- -5' |
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5841 | 5' | -58 | NC_001806.1 | + | 70824 | 0.75 | 0.403777 |
Target: 5'- gCUGgcgGCGUCUgUCGGCCUGcuaucaagccgcggcGCGGCCg -3' miRNA: 3'- gGACa--UGCAGGgAGCCGGGC---------------UGCUGG- -5' |
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5841 | 5' | -58 | NC_001806.1 | + | 151520 | 0.75 | 0.407089 |
Target: 5'- aCUGUGCGguugggacggcgCCCgUgGGCCCGgGCGGCCg -3' miRNA: 3'- gGACAUGCa-----------GGG-AgCCGGGC-UGCUGG- -5' |
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5841 | 5' | -58 | NC_001806.1 | + | 102489 | 0.74 | 0.451636 |
Target: 5'- aCUGUGgcCGgccgCCCUCGGuCCCGaucaccGCGGCCa -3' miRNA: 3'- gGACAU--GCa---GGGAGCC-GGGC------UGCUGG- -5' |
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5841 | 5' | -58 | NC_001806.1 | + | 143971 | 0.74 | 0.460506 |
Target: 5'- cCCUGccccgGCGaCCCcCGGCCCGcACGAUCc -3' miRNA: 3'- -GGACa----UGCaGGGaGCCGGGC-UGCUGG- -5' |
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5841 | 5' | -58 | NC_001806.1 | + | 90499 | 0.72 | 0.58277 |
Target: 5'- ---cUACacCCCcCGGCCCGGCGACCu -3' miRNA: 3'- ggacAUGcaGGGaGCCGGGCUGCUGG- -5' |
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5841 | 5' | -58 | NC_001806.1 | + | 56638 | 0.72 | 0.58277 |
Target: 5'- gCCgGUGCGaCCUcaUCGG-CCGGCGGCCc -3' miRNA: 3'- -GGaCAUGCaGGG--AGCCgGGCUGCUGG- -5' |
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5841 | 5' | -58 | NC_001806.1 | + | 86645 | 0.72 | 0.544027 |
Target: 5'- uCUUGUcgcccACGgCCgUCaGCCCGGCGGCCg -3' miRNA: 3'- -GGACA-----UGCaGGgAGcCGGGCUGCUGG- -5' |
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5841 | 5' | -58 | NC_001806.1 | + | 124357 | 0.72 | 0.534466 |
Target: 5'- cCCUGcGCacaacaaacCCCUCGGUCuCGACGGCCc -3' miRNA: 3'- -GGACaUGca-------GGGAGCCGG-GCUGCUGG- -5' |
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5841 | 5' | -58 | NC_001806.1 | + | 126491 | 0.72 | 0.534466 |
Target: 5'- cCCggGcGCGUCCC-CGGCCCGGaggaGGCUc -3' miRNA: 3'- -GGa-CaUGCAGGGaGCCGGGCUg---CUGG- -5' |
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5841 | 5' | -58 | NC_001806.1 | + | 72126 | 0.71 | 0.641737 |
Target: 5'- ----cACGUUCUUcgcCGGCCCGugGGCCc -3' miRNA: 3'- ggacaUGCAGGGA---GCCGGGCugCUGG- -5' |
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5841 | 5' | -58 | NC_001806.1 | + | 121647 | 0.71 | 0.622036 |
Target: 5'- uCCUGUcccuGCGUCgCCcCGuGUCUGugGGCCa -3' miRNA: 3'- -GGACA----UGCAG-GGaGC-CGGGCugCUGG- -5' |
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5841 | 5' | -58 | NC_001806.1 | + | 125295 | 0.71 | 0.612192 |
Target: 5'- aCUaaGCGUCCCUgGGCCC--UGGCCg -3' miRNA: 3'- gGAcaUGCAGGGAgCCGGGcuGCUGG- -5' |
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5841 | 5' | -58 | NC_001806.1 | + | 115906 | 0.71 | 0.612192 |
Target: 5'- cUCgGUGCGUCUg--GGCCCGACaGACCu -3' miRNA: 3'- -GGaCAUGCAGGgagCCGGGCUG-CUGG- -5' |
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5841 | 5' | -58 | NC_001806.1 | + | 51683 | 0.71 | 0.612192 |
Target: 5'- gCCUGgACGUCCCcgaGGacCCCGugGGCg -3' miRNA: 3'- -GGACaUGCAGGGag-CC--GGGCugCUGg -5' |
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5841 | 5' | -58 | NC_001806.1 | + | 137804 | 0.71 | 0.602362 |
Target: 5'- cCCUGUACcacaCCCcccaguacgCGGCCCGccuGCGGCCc -3' miRNA: 3'- -GGACAUGca--GGGa--------GCCGGGC---UGCUGG- -5' |
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5841 | 5' | -58 | NC_001806.1 | + | 57357 | 0.71 | 0.592553 |
Target: 5'- cCCUGgcCGUCCUccggggacaCGGCCCGGUGGCUg -3' miRNA: 3'- -GGACauGCAGGGa--------GCCGGGCUGCUGG- -5' |
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5841 | 5' | -58 | NC_001806.1 | + | 131961 | 0.71 | 0.592553 |
Target: 5'- --cGUGCGUCCUggCGGCCCuGGagcgccaGACCg -3' miRNA: 3'- ggaCAUGCAGGGa-GCCGGG-CUg------CUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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