Results 21 - 40 of 113 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5855 | 5' | -55.5 | NC_001806.1 | + | 34317 | 0.72 | 0.648241 |
Target: 5'- cGUCGCGGUACCGCc----CGACGACAg -3' miRNA: 3'- -CGGUGUCAUGGCGauggcGCUGCUGU- -5' |
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5855 | 5' | -55.5 | NC_001806.1 | + | 36743 | 0.72 | 0.648241 |
Target: 5'- uCCACGGccACCGCcGCCaGCGACGuACAg -3' miRNA: 3'- cGGUGUCa-UGGCGaUGG-CGCUGC-UGU- -5' |
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5855 | 5' | -55.5 | NC_001806.1 | + | 48473 | 0.72 | 0.658424 |
Target: 5'- uGCUGCAGacccccggGCgGCgccGCCGCGGCGGCGa -3' miRNA: 3'- -CGGUGUCa-------UGgCGa--UGGCGCUGCUGU- -5' |
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5855 | 5' | -55.5 | NC_001806.1 | + | 31061 | 0.72 | 0.668585 |
Target: 5'- aCCGCgAGcGCCGCUACUGCG-CGAUc -3' miRNA: 3'- cGGUG-UCaUGGCGAUGGCGCuGCUGu -5' |
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5855 | 5' | -55.5 | NC_001806.1 | + | 68183 | 0.72 | 0.668585 |
Target: 5'- gGCCcCAGcUGCgCGCUGCCGCGGaGGCc -3' miRNA: 3'- -CGGuGUC-AUG-GCGAUGGCGCUgCUGu -5' |
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5855 | 5' | -55.5 | NC_001806.1 | + | 149078 | 0.71 | 0.688811 |
Target: 5'- gGCCACGGcgGCCucGCUGCCGcCGGCcACGc -3' miRNA: 3'- -CGGUGUCa-UGG--CGAUGGC-GCUGcUGU- -5' |
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5855 | 5' | -55.5 | NC_001806.1 | + | 15567 | 0.71 | 0.698859 |
Target: 5'- gGCUGCAG-ACCGCggGCCGCcACGugGc -3' miRNA: 3'- -CGGUGUCaUGGCGa-UGGCGcUGCugU- -5' |
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5855 | 5' | -55.5 | NC_001806.1 | + | 26161 | 0.71 | 0.698859 |
Target: 5'- aGCCuGCuGUuUCGCUACUGCGugGGCc -3' miRNA: 3'- -CGG-UGuCAuGGCGAUGGCGCugCUGu -5' |
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5855 | 5' | -55.5 | NC_001806.1 | + | 130351 | 0.71 | 0.714815 |
Target: 5'- cGCCGcCGGgcCCGCgcggcgguggccgGCCGCGACGcCAc -3' miRNA: 3'- -CGGU-GUCauGGCGa------------UGGCGCUGCuGU- -5' |
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5855 | 5' | -55.5 | NC_001806.1 | + | 147372 | 0.7 | 0.728631 |
Target: 5'- gGCCAgCAGaGCCaGCUGUCGCGGCGAg- -3' miRNA: 3'- -CGGU-GUCaUGG-CGAUGGCGCUGCUgu -5' |
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5855 | 5' | -55.5 | NC_001806.1 | + | 150870 | 0.7 | 0.728631 |
Target: 5'- cGCCagcACGGUGCCGCUGcggcCCGUGGcCGAg- -3' miRNA: 3'- -CGG---UGUCAUGGCGAU----GGCGCU-GCUgu -5' |
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5855 | 5' | -55.5 | NC_001806.1 | + | 18853 | 0.7 | 0.728631 |
Target: 5'- uCCGCGGgcCCGCguacACCaCGGCGGCAg -3' miRNA: 3'- cGGUGUCauGGCGa---UGGcGCUGCUGU- -5' |
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5855 | 5' | -55.5 | NC_001806.1 | + | 118502 | 0.7 | 0.738402 |
Target: 5'- gGCgGCGGcUGCgGCgGCUGCGGCGGCc -3' miRNA: 3'- -CGgUGUC-AUGgCGaUGGCGCUGCUGu -5' |
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5855 | 5' | -55.5 | NC_001806.1 | + | 10044 | 0.7 | 0.748081 |
Target: 5'- gGCUGCAGgcCCGCUucAUCGUccGGCGGCAg -3' miRNA: 3'- -CGGUGUCauGGCGA--UGGCG--CUGCUGU- -5' |
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5855 | 5' | -55.5 | NC_001806.1 | + | 128431 | 0.7 | 0.757659 |
Target: 5'- cGCCuCGGgcCCGCUgcGCCGCauGGCGGCc -3' miRNA: 3'- -CGGuGUCauGGCGA--UGGCG--CUGCUGu -5' |
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5855 | 5' | -55.5 | NC_001806.1 | + | 74777 | 0.7 | 0.757659 |
Target: 5'- cCCGCAGaUGCUGCgccGCCGgGGCGAg- -3' miRNA: 3'- cGGUGUC-AUGGCGa--UGGCgCUGCUgu -5' |
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5855 | 5' | -55.5 | NC_001806.1 | + | 65597 | 0.7 | 0.757659 |
Target: 5'- aGCC-CGGcgGCCGUgagGCCGCGGC-ACAg -3' miRNA: 3'- -CGGuGUCa-UGGCGa--UGGCGCUGcUGU- -5' |
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5855 | 5' | -55.5 | NC_001806.1 | + | 83985 | 0.7 | 0.776474 |
Target: 5'- gGCCACGGccaaGCUGCgcGCCGCcauGGCGGCGu -3' miRNA: 3'- -CGGUGUCa---UGGCGa-UGGCG---CUGCUGU- -5' |
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5855 | 5' | -55.5 | NC_001806.1 | + | 152258 | 0.69 | 0.793875 |
Target: 5'- cGCCGCc--ACCGCUuuaaaggGCCGCGcGCGACc -3' miRNA: 3'- -CGGUGucaUGGCGA-------UGGCGC-UGCUGu -5' |
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5855 | 5' | -55.5 | NC_001806.1 | + | 548 | 0.69 | 0.793875 |
Target: 5'- cGCCGCc--ACCGCUuuaaaggGCCGCGcGCGACc -3' miRNA: 3'- -CGGUGucaUGGCGA-------UGGCGC-UGCUGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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