miRNA display CGI


Results 21 - 40 of 271 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5859 3' -65.5 NC_001806.1 + 151896 0.74 0.1587
Target:  5'- uUGCgCG-CgCGCGCGCCCgCGGGggGCCCg -3'
miRNA:   3'- -ACG-GCuG-GCGCGCGGG-GUCCagCGGG- -5'
5859 3' -65.5 NC_001806.1 + 148457 0.74 0.162518
Target:  5'- gGCCG-CCGCGUGCgCCAGG-C-CCCa -3'
miRNA:   3'- aCGGCuGGCGCGCGgGGUCCaGcGGG- -5'
5859 3' -65.5 NC_001806.1 + 57501 0.74 0.162518
Target:  5'- cGCCGACCGCGCGC---GGG-CGCUCu -3'
miRNA:   3'- aCGGCUGGCGCGCGgggUCCaGCGGG- -5'
5859 3' -65.5 NC_001806.1 + 130328 0.74 0.164068
Target:  5'- gGCCGGCCGCGaCGCCacgggcccuucacggCCGGG-CaGCCCc -3'
miRNA:   3'- aCGGCUGGCGC-GCGG---------------GGUCCaG-CGGG- -5'
5859 3' -65.5 NC_001806.1 + 44988 0.74 0.166419
Target:  5'- aUGCCGaguuucuaggggGCCGCGUGCugaccaCCCcGGUCGUCCa -3'
miRNA:   3'- -ACGGC------------UGGCGCGCG------GGGuCCAGCGGG- -5'
5859 3' -65.5 NC_001806.1 + 73592 0.74 0.166419
Target:  5'- gUGCUGGCgGCaGUGCUCCuGGgcgCGCCCg -3'
miRNA:   3'- -ACGGCUGgCG-CGCGGGGuCCa--GCGGG- -5'
5859 3' -65.5 NC_001806.1 + 81294 0.74 0.166419
Target:  5'- gGCCGACCaGCGCGCCgCggccauccgagAGGUaauggcgcaugCGCCCg -3'
miRNA:   3'- aCGGCUGG-CGCGCGGgG-----------UCCA-----------GCGGG- -5'
5859 3' -65.5 NC_001806.1 + 49311 0.74 0.170403
Target:  5'- gGCCaGACCcggGgGCGCCCCcccGUCGCCCc -3'
miRNA:   3'- aCGG-CUGG---CgCGCGGGGuc-CAGCGGG- -5'
5859 3' -65.5 NC_001806.1 + 148425 0.74 0.170403
Target:  5'- gGCCGGCCGCcaugGCGUagCCCAGGUggggcacgGCCCg -3'
miRNA:   3'- aCGGCUGGCG----CGCG--GGGUCCAg-------CGGG- -5'
5859 3' -65.5 NC_001806.1 + 98341 0.74 0.174473
Target:  5'- cGCCGACCGCcugcucGUGCUCCauggGGGUCGgauCCCa -3'
miRNA:   3'- aCGGCUGGCG------CGCGGGG----UCCAGC---GGG- -5'
5859 3' -65.5 NC_001806.1 + 62353 0.73 0.178629
Target:  5'- uUGCCGGCCGCcgggguucaucgGCGaCCCCGuGGUUaCCCg -3'
miRNA:   3'- -ACGGCUGGCG------------CGC-GGGGU-CCAGcGGG- -5'
5859 3' -65.5 NC_001806.1 + 87403 0.73 0.178629
Target:  5'- aGCCccuCCGCGCGUCCCGGGccacggcgggaUCGgCCg -3'
miRNA:   3'- aCGGcu-GGCGCGCGGGGUCC-----------AGCgGG- -5'
5859 3' -65.5 NC_001806.1 + 102913 0.73 0.186331
Target:  5'- cGCCGAgCGUcccggcaGCGCCCCGGGcCcgaugcgGCCCg -3'
miRNA:   3'- aCGGCUgGCG-------CGCGGGGUCCaG-------CGGG- -5'
5859 3' -65.5 NC_001806.1 + 23263 0.73 0.187205
Target:  5'- gGCCGAauGgGUGCCCCGGGUUcaCCCg -3'
miRNA:   3'- aCGGCUggCgCGCGGGGUCCAGc-GGG- -5'
5859 3' -65.5 NC_001806.1 + 33519 0.73 0.187205
Target:  5'- cUGgCGGCCGCGgGaauCCCCuGGcCGCCCu -3'
miRNA:   3'- -ACgGCUGGCGCgC---GGGGuCCaGCGGG- -5'
5859 3' -65.5 NC_001806.1 + 72748 0.73 0.195686
Target:  5'- aGCaCGACCGgGCGUCCCGgccgaaagcacgcGGccggCGCCCg -3'
miRNA:   3'- aCG-GCUGGCgCGCGGGGU-------------CCa---GCGGG- -5'
5859 3' -65.5 NC_001806.1 + 58384 0.73 0.196141
Target:  5'- uUGCCGGuCgGCGgGCCCgCGGGaggcCGCCCc -3'
miRNA:   3'- -ACGGCU-GgCGCgCGGG-GUCCa---GCGGG- -5'
5859 3' -65.5 NC_001806.1 + 28380 0.73 0.196141
Target:  5'- aGCCGcucgucucaucGCCGCGCGuCCCCcGaGaCGCCCg -3'
miRNA:   3'- aCGGC-----------UGGCGCGC-GGGGuC-CaGCGGG- -5'
5859 3' -65.5 NC_001806.1 + 75693 0.73 0.196141
Target:  5'- gUGCUGGCCGCGCGCgagcgCCGGGcccaGCUCg -3'
miRNA:   3'- -ACGGCUGGCGCGCGg----GGUCCag--CGGG- -5'
5859 3' -65.5 NC_001806.1 + 148794 0.73 0.200748
Target:  5'- gGCCGGCCuggGCGCgGCgCCCGGcGUCGUCg -3'
miRNA:   3'- aCGGCUGG---CGCG-CG-GGGUC-CAGCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.