miRNA display CGI


Results 1 - 20 of 271 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5859 3' -65.5 NC_001806.1 + 152258 0.67 0.427527
Target:  5'- cGCCGccaccgcuuuaaaggGCCGCGCGCgaccCCCGGGgggUguguuuugggggggGCCCg -3'
miRNA:   3'- aCGGC---------------UGGCGCGCG----GGGUCCa--G--------------CGGG- -5'
5859 3' -65.5 NC_001806.1 + 151942 0.72 0.230398
Target:  5'- cGCCcGCCGCGCGCgcgcacgccgCCCGGaccGcCGCCCg -3'
miRNA:   3'- aCGGcUGGCGCGCG----------GGGUC---CaGCGGG- -5'
5859 3' -65.5 NC_001806.1 + 151896 0.74 0.1587
Target:  5'- uUGCgCG-CgCGCGCGCCCgCGGGggGCCCg -3'
miRNA:   3'- -ACG-GCuG-GCGCGCGGG-GUCCagCGGG- -5'
5859 3' -65.5 NC_001806.1 + 150976 0.7 0.287932
Target:  5'- cGCCG-CCGuCGUcuucGUCCCAGG-CGCCUu -3'
miRNA:   3'- aCGGCuGGC-GCG----CGGGGUCCaGCGGG- -5'
5859 3' -65.5 NC_001806.1 + 150860 0.67 0.426698
Target:  5'- gUGCCG-CUGCG-GCCCguGGcCgagGCCCa -3'
miRNA:   3'- -ACGGCuGGCGCgCGGGguCCaG---CGGG- -5'
5859 3' -65.5 NC_001806.1 + 150816 0.69 0.327579
Target:  5'- cGCCGGCgGCaGgGcCCCCGGGcCGUCg -3'
miRNA:   3'- aCGGCUGgCG-CgC-GGGGUCCaGCGGg -5'
5859 3' -65.5 NC_001806.1 + 150694 0.71 0.263659
Target:  5'- gGCCGGCgCGCaccgccucGCGCCCCAG--CGCCa -3'
miRNA:   3'- aCGGCUG-GCG--------CGCGGGGUCcaGCGGg -5'
5859 3' -65.5 NC_001806.1 + 150653 0.68 0.386494
Target:  5'- gGCCGcaGCgGCGCGCCC-AGG-C-CCCa -3'
miRNA:   3'- aCGGC--UGgCGCGCGGGgUCCaGcGGG- -5'
5859 3' -65.5 NC_001806.1 + 150336 0.66 0.504856
Target:  5'- gGCCaGcACCGUGCGgCgCAGGUccCGCgCCg -3'
miRNA:   3'- aCGG-C-UGGCGCGCgGgGUCCA--GCG-GG- -5'
5859 3' -65.5 NC_001806.1 + 149947 0.68 0.410317
Target:  5'- gGCC--CCGC-CGCCggCCAGGuccUCGCCCg -3'
miRNA:   3'- aCGGcuGGCGcGCGG--GGUCC---AGCGGG- -5'
5859 3' -65.5 NC_001806.1 + 149584 0.71 0.263659
Target:  5'- cGCCG-CCGUGUggcuggGCCCCGGGggcugcCGCCg -3'
miRNA:   3'- aCGGCuGGCGCG------CGGGGUCCa-----GCGGg -5'
5859 3' -65.5 NC_001806.1 + 149485 0.71 0.252158
Target:  5'- gGCCugcGCCGCgGCGgCCCGGGgCGCCg -3'
miRNA:   3'- aCGGc--UGGCG-CGCgGGGUCCaGCGGg -5'
5859 3' -65.5 NC_001806.1 + 149337 0.71 0.241073
Target:  5'- cGCgGGCCGC-CGCCuCCGGG-CGgCCg -3'
miRNA:   3'- aCGgCUGGCGcGCGG-GGUCCaGCgGG- -5'
5859 3' -65.5 NC_001806.1 + 149226 0.66 0.513934
Target:  5'- cGCUGGCCGcCGcCGCCagCAGGgggCGCa- -3'
miRNA:   3'- aCGGCUGGC-GC-GCGGg-GUCCa--GCGgg -5'
5859 3' -65.5 NC_001806.1 + 149058 0.67 0.44346
Target:  5'- cGCCGGCCaCGCGC---AGGUC-CCCg -3'
miRNA:   3'- aCGGCUGGcGCGCGgggUCCAGcGGG- -5'
5859 3' -65.5 NC_001806.1 + 148904 0.7 0.287932
Target:  5'- gGCgGGCCGgGCcccggccaGCCCCgggacggccgccAGGUCGCCg -3'
miRNA:   3'- aCGgCUGGCgCG--------CGGGG------------UCCAGCGGg -5'
5859 3' -65.5 NC_001806.1 + 148794 0.73 0.200748
Target:  5'- gGCCGGCCuggGCGCgGCgCCCGGcGUCGUCg -3'
miRNA:   3'- aCGGCUGG---CGCG-CG-GGGUC-CAGCGGg -5'
5859 3' -65.5 NC_001806.1 + 148457 0.74 0.162518
Target:  5'- gGCCG-CCGCGUGCgCCAGG-C-CCCa -3'
miRNA:   3'- aCGGCuGGCGCGCGgGGUCCaGcGGG- -5'
5859 3' -65.5 NC_001806.1 + 148425 0.74 0.170403
Target:  5'- gGCCGGCCGCcaugGCGUagCCCAGGUggggcacgGCCCg -3'
miRNA:   3'- aCGGCUGGCG----CGCG--GGGUCCAg-------CGGG- -5'
5859 3' -65.5 NC_001806.1 + 148224 0.69 0.327579
Target:  5'- cUGCUGcGCgGCGuCGCCCagcuCGGG-CGCCCa -3'
miRNA:   3'- -ACGGC-UGgCGC-GCGGG----GUCCaGCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.