miRNA display CGI


Results 1 - 20 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5859 5' -57.9 NC_001806.1 + 150645 0.79 0.166139
Target:  5'- --cGGCGCGCCCAGGCCCcagcgcgcGCAGGCGg -3'
miRNA:   3'- uucUUGCGCGGGUCCGGG--------CGUUUGUa -5'
5859 5' -57.9 NC_001806.1 + 149738 0.69 0.574809
Target:  5'- cGGGGGCGgGCCCGGcGCaCCGCGcGGCGa -3'
miRNA:   3'- -UUCUUGCgCGGGUC-CG-GGCGU-UUGUa -5'
5859 5' -57.9 NC_001806.1 + 149447 0.73 0.402568
Target:  5'- cGGGGGCGgGCUCGGGcCCCGgGGGCGUg -3'
miRNA:   3'- -UUCUUGCgCGGGUCC-GGGCgUUUGUA- -5'
5859 5' -57.9 NC_001806.1 + 146138 0.67 0.708689
Target:  5'- aAAGGcccgGCGCGaCCgAcGCCCGCAGACGg -3'
miRNA:   3'- -UUCU----UGCGC-GGgUcCGGGCGUUUGUa -5'
5859 5' -57.9 NC_001806.1 + 144716 0.68 0.647109
Target:  5'- uGGAGCauaCGCUCGGGCCCGCGu---- -3'
miRNA:   3'- uUCUUGc--GCGGGUCCGGGCGUuugua -5'
5859 5' -57.9 NC_001806.1 + 144400 0.67 0.708689
Target:  5'- cAAGAgACGuCGCCCcuguGGCCCugGCGGACGg -3'
miRNA:   3'- -UUCU-UGC-GCGGGu---CCGGG--CGUUUGUa -5'
5859 5' -57.9 NC_001806.1 + 138652 0.68 0.636752
Target:  5'- uGGAACGgGUCCgguAGGCCCGCcuGGAUGUg -3'
miRNA:   3'- uUCUUGCgCGGG---UCCGGGCG--UUUGUA- -5'
5859 5' -57.9 NC_001806.1 + 132111 0.68 0.657454
Target:  5'- gGAGAGacccgcccccCGcCGCCCGGGCCCGCc----- -3'
miRNA:   3'- -UUCUU----------GC-GCGGGUCCGGGCGuuugua -5'
5859 5' -57.9 NC_001806.1 + 130753 0.67 0.698537
Target:  5'- -cGGGCcccgGCCCGGGgCCGCGAACGg -3'
miRNA:   3'- uuCUUGcg--CGGGUCCgGGCGUUUGUa -5'
5859 5' -57.9 NC_001806.1 + 130415 0.69 0.605691
Target:  5'- cGAGGcCGCGCCCAaGCCC-CGGGCGg -3'
miRNA:   3'- -UUCUuGCGCGGGUcCGGGcGUUUGUa -5'
5859 5' -57.9 NC_001806.1 + 130355 0.71 0.494743
Target:  5'- -cGAGCGC-CgCCGGGCCCGCGcGGCGg -3'
miRNA:   3'- uuCUUGCGcG-GGUCCGGGCGU-UUGUa -5'
5859 5' -57.9 NC_001806.1 + 129486 0.71 0.475492
Target:  5'- cGGGcgcCGCGCCCAGGCCgGCc-GCGUg -3'
miRNA:   3'- uUCUu--GCGCGGGUCCGGgCGuuUGUA- -5'
5859 5' -57.9 NC_001806.1 + 129298 0.68 0.678073
Target:  5'- --cGACGCGCCCc-GCCUGCGcGCGUg -3'
miRNA:   3'- uucUUGCGCGGGucCGGGCGUuUGUA- -5'
5859 5' -57.9 NC_001806.1 + 128435 0.73 0.368863
Target:  5'- ---uGCGCGCCuCGGGCCCGCugcgccGCAUg -3'
miRNA:   3'- uucuUGCGCGG-GUCCGGGCGuu----UGUA- -5'
5859 5' -57.9 NC_001806.1 + 128060 0.69 0.605691
Target:  5'- -cGuGCGCGCCUgcgacuGGCCCGCcGACGg -3'
miRNA:   3'- uuCuUGCGCGGGu-----CCGGGCGuUUGUa -5'
5859 5' -57.9 NC_001806.1 + 127623 0.69 0.574809
Target:  5'- -uGGGCGCGCCgCugcGGCCCGUguACGUg -3'
miRNA:   3'- uuCUUGCGCGG-Gu--CCGGGCGuuUGUA- -5'
5859 5' -57.9 NC_001806.1 + 127583 0.68 0.647109
Target:  5'- cGAGGcgguGCGCGCCgGcccGGCCCGguGGCGc -3'
miRNA:   3'- -UUCU----UGCGCGGgU---CCGGGCguUUGUa -5'
5859 5' -57.9 NC_001806.1 + 126401 0.68 0.636752
Target:  5'- --uGugGCaGCCCGGGCCCcccGCGGGCGc -3'
miRNA:   3'- uucUugCG-CGGGUCCGGG---CGUUUGUa -5'
5859 5' -57.9 NC_001806.1 + 125845 0.67 0.748533
Target:  5'- --cGGC-CGCCCGGGCCCaCGGGCGc -3'
miRNA:   3'- uucUUGcGCGGGUCCGGGcGUUUGUa -5'
5859 5' -57.9 NC_001806.1 + 125768 0.68 0.688329
Target:  5'- cAGGAGCGCGCCCGcGGCcgccCCGCc----- -3'
miRNA:   3'- -UUCUUGCGCGGGU-CCG----GGCGuuugua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.