miRNA display CGI


Results 1 - 20 of 134 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5867 5' -58.1 NC_001806.1 + 75146 0.66 0.853343
Target:  5'- cGCCaagaGCgCCGAGCGG-GCCGGggCCGUGg -3'
miRNA:   3'- -CGG----CG-GGCUUGUCgCGGUCaaGGUGC- -5'
5867 5' -58.1 NC_001806.1 + 124099 0.66 0.853343
Target:  5'- gGCCGCCCc--CAGCgcgaggugagggGCCGGgcgCCAUGu -3'
miRNA:   3'- -CGGCGGGcuuGUCG------------CGGUCaa-GGUGC- -5'
5867 5' -58.1 NC_001806.1 + 113980 0.66 0.853343
Target:  5'- aCCGCCgggCGAGCGGCGUCgAGUaUCgGCu -3'
miRNA:   3'- cGGCGG---GCUUGUCGCGG-UCA-AGgUGc -5'
5867 5' -58.1 NC_001806.1 + 4270 0.66 0.853343
Target:  5'- -aCGCCCcccGCGGCGCCGcGgcUCGCGa -3'
miRNA:   3'- cgGCGGGcu-UGUCGCGGU-CaaGGUGC- -5'
5867 5' -58.1 NC_001806.1 + 129718 0.66 0.853343
Target:  5'- uGgCGCgCGAgaacGCGGCGCUgacgGGggCCGCGg -3'
miRNA:   3'- -CgGCGgGCU----UGUCGCGG----UCaaGGUGC- -5'
5867 5' -58.1 NC_001806.1 + 129137 0.66 0.853343
Target:  5'- cGCUGCCgCGGGacccGCGCCugccgAGcUCCGCGg -3'
miRNA:   3'- -CGGCGG-GCUUgu--CGCGG-----UCaAGGUGC- -5'
5867 5' -58.1 NC_001806.1 + 119159 0.66 0.853343
Target:  5'- uGCCggcgagcggGUCCGGACGGgGCCcGgaccgCCGCGg -3'
miRNA:   3'- -CGG---------CGGGCUUGUCgCGGuCaa---GGUGC- -5'
5867 5' -58.1 NC_001806.1 + 77676 0.66 0.848701
Target:  5'- cGUCGCCCuaccccgacgacggcGGGCuGuCGCCAGaggCCACGc -3'
miRNA:   3'- -CGGCGGG---------------CUUGuC-GCGGUCaa-GGUGC- -5'
5867 5' -58.1 NC_001806.1 + 149255 0.66 0.845567
Target:  5'- gGCCGCCagcgcgucGGCGGCGuCCGGUgcgcuggCCGCc -3'
miRNA:   3'- -CGGCGGgc------UUGUCGC-GGUCAa------GGUGc -5'
5867 5' -58.1 NC_001806.1 + 95260 0.66 0.845567
Target:  5'- cGCCGCauaGGCGGCGCCcAGUgCCAgGc -3'
miRNA:   3'- -CGGCGggcUUGUCGCGG-UCAaGGUgC- -5'
5867 5' -58.1 NC_001806.1 + 34449 0.66 0.845567
Target:  5'- cGCCGCgaaacgccCCGGgauGCAGgGCCAGgaCCuGCGu -3'
miRNA:   3'- -CGGCG--------GGCU---UGUCgCGGUCaaGG-UGC- -5'
5867 5' -58.1 NC_001806.1 + 148457 0.66 0.845567
Target:  5'- gGCCGCCgCGu---GCGCCAGgccCCAg- -3'
miRNA:   3'- -CGGCGG-GCuuguCGCGGUCaa-GGUgc -5'
5867 5' -58.1 NC_001806.1 + 77973 0.66 0.845567
Target:  5'- cGCC-CCCGAuc-GCGaCCAGccCCACGg -3'
miRNA:   3'- -CGGcGGGCUuguCGC-GGUCaaGGUGC- -5'
5867 5' -58.1 NC_001806.1 + 56741 0.66 0.840811
Target:  5'- aCCGCCUGAcgaaGCGGUcguugGCCAGccuggggcgcugcgUCCGCGa -3'
miRNA:   3'- cGGCGGGCU----UGUCG-----CGGUCa-------------AGGUGC- -5'
5867 5' -58.1 NC_001806.1 + 67433 0.66 0.840811
Target:  5'- uCCgGCCCGGGCccuaucacggcaaggAGCGCCGGcggUCGCGc -3'
miRNA:   3'- cGG-CGGGCUUG---------------UCGCGGUCaa-GGUGC- -5'
5867 5' -58.1 NC_001806.1 + 1585 0.66 0.837604
Target:  5'- cGCCGCgCuGGCGGCcgccgaugGCCAGUcCCGCc -3'
miRNA:   3'- -CGGCGgGcUUGUCG--------CGGUCAaGGUGc -5'
5867 5' -58.1 NC_001806.1 + 149926 0.66 0.829462
Target:  5'- cUCGCCCGGcaGCGGCGaguaCAGcaCCACc -3'
miRNA:   3'- cGGCGGGCU--UGUCGCg---GUCaaGGUGc -5'
5867 5' -58.1 NC_001806.1 + 95806 0.66 0.829462
Target:  5'- -gCGCCUGAcACAGCuccGUCAGggCCACc -3'
miRNA:   3'- cgGCGGGCU-UGUCG---CGGUCaaGGUGc -5'
5867 5' -58.1 NC_001806.1 + 103967 0.66 0.829462
Target:  5'- cGCC-CCCGAagagGCGGgGCUGGcggcUCCGCGc -3'
miRNA:   3'- -CGGcGGGCU----UGUCgCGGUCa---AGGUGC- -5'
5867 5' -58.1 NC_001806.1 + 115023 0.66 0.829462
Target:  5'- cGCCGCCgCGAACAcaguuCGuCCAGg-CCGCa -3'
miRNA:   3'- -CGGCGG-GCUUGUc----GC-GGUCaaGGUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.