miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5868 3' -57.6 NC_001806.1 + 114394 0.66 0.861858
Target:  5'- uGUcCGCUGGcCUCCGGGuGGGuCGGg- -3'
miRNA:   3'- cCA-GCGAUUcGAGGCCC-CCCuGCUau -5'
5868 3' -57.6 NC_001806.1 + 31960 0.66 0.854239
Target:  5'- uGGcCGUccuGGCacacCUGGGGGGACGGg- -3'
miRNA:   3'- -CCaGCGau-UCGa---GGCCCCCCUGCUau -5'
5868 3' -57.6 NC_001806.1 + 52480 0.66 0.854239
Target:  5'- gGGUCGUUGuuGGUUCCGGucccccaccuGaGGGCGAUAg -3'
miRNA:   3'- -CCAGCGAU--UCGAGGCC----------CcCCUGCUAU- -5'
5868 3' -57.6 NC_001806.1 + 84270 0.66 0.854239
Target:  5'- gGGUC-CUgGAGggCCGcGGGGGAuCGAUAa -3'
miRNA:   3'- -CCAGcGA-UUCgaGGC-CCCCCU-GCUAU- -5'
5868 3' -57.6 NC_001806.1 + 96954 0.66 0.83842
Target:  5'- uGGgggCGCUgucguacaccagGAGUcccCCGGGuGGGGCGGUGa -3'
miRNA:   3'- -CCa--GCGA------------UUCGa--GGCCC-CCCUGCUAU- -5'
5868 3' -57.6 NC_001806.1 + 56838 0.66 0.83842
Target:  5'- cGUCGCcgcGGGC-CCGGGGGGcAgGGg- -3'
miRNA:   3'- cCAGCGa--UUCGaGGCCCCCC-UgCUau -5'
5868 3' -57.6 NC_001806.1 + 115544 0.66 0.83842
Target:  5'- gGGUCGCUGucauAGUgCaaaaGGGGGGAUGc-- -3'
miRNA:   3'- -CCAGCGAU----UCGaGg---CCCCCCUGCuau -5'
5868 3' -57.6 NC_001806.1 + 107476 0.66 0.83842
Target:  5'- cGGcUCGgUGAGggCCGGGGGGGuCGc-- -3'
miRNA:   3'- -CC-AGCgAUUCgaGGCCCCCCU-GCuau -5'
5868 3' -57.6 NC_001806.1 + 114021 0.66 0.830232
Target:  5'- gGGU-GCUGGGUacgCCGGGGucuucuGGACGAg- -3'
miRNA:   3'- -CCAgCGAUUCGa--GGCCCC------CCUGCUau -5'
5868 3' -57.6 NC_001806.1 + 122308 0.66 0.830232
Target:  5'- aGUCGCgagccgcGGCgCCGcGGGGGGCGu-- -3'
miRNA:   3'- cCAGCGau-----UCGaGGC-CCCCCUGCuau -5'
5868 3' -57.6 NC_001806.1 + 4776 0.66 0.830232
Target:  5'- aGGggaGCgGGGCggcgCCGGaGGGGGCGGc- -3'
miRNA:   3'- -CCag-CGaUUCGa---GGCC-CCCCUGCUau -5'
5868 3' -57.6 NC_001806.1 + 66248 0.67 0.816768
Target:  5'- cGGgggCGCUuggccggggagggcaGGGCcgCgGGGGGGGCGGg- -3'
miRNA:   3'- -CCa--GCGA---------------UUCGa-GgCCCCCCUGCUau -5'
5868 3' -57.6 NC_001806.1 + 28174 0.67 0.795797
Target:  5'- cGGg-GCccgAAGCUUCGGGGGGucugggggauACGGUGa -3'
miRNA:   3'- -CCagCGa--UUCGAGGCCCCCC----------UGCUAU- -5'
5868 3' -57.6 NC_001806.1 + 38987 0.67 0.795797
Target:  5'- gGGUgGCcgacgugGAGCUgCCGGGGGGG-GAc- -3'
miRNA:   3'- -CCAgCGa------UUCGA-GGCCCCCCUgCUau -5'
5868 3' -57.6 NC_001806.1 + 114289 0.67 0.786807
Target:  5'- gGGUUGCgauuGGUUCUGGGGGcacgccGGCGGg- -3'
miRNA:   3'- -CCAGCGau--UCGAGGCCCCC------CUGCUau -5'
5868 3' -57.6 NC_001806.1 + 110199 0.67 0.777681
Target:  5'- cGUgGCUAGGCg-CGGGGGGcUGAa- -3'
miRNA:   3'- cCAgCGAUUCGagGCCCCCCuGCUau -5'
5868 3' -57.6 NC_001806.1 + 41558 0.68 0.759057
Target:  5'- uGGUCGacgAGGCcgccuUCgGGGGGGAgGAg- -3'
miRNA:   3'- -CCAGCga-UUCG-----AGgCCCCCCUgCUau -5'
5868 3' -57.6 NC_001806.1 + 96751 0.68 0.759057
Target:  5'- cGGUCGCaccacacGGGC-CCGGGGGGuuuagugggGCGGc- -3'
miRNA:   3'- -CCAGCGa------UUCGaGGCCCCCC---------UGCUau -5'
5868 3' -57.6 NC_001806.1 + 1159 0.68 0.749576
Target:  5'- gGGUCGCgGGGgUCgCGGGGGGcucCGGc- -3'
miRNA:   3'- -CCAGCGaUUCgAG-GCCCCCCu--GCUau -5'
5868 3' -57.6 NC_001806.1 + 96889 0.68 0.749576
Target:  5'- aGGUCGg-GAGCcggagcgaUUgGGGGGGACGGa- -3'
miRNA:   3'- -CCAGCgaUUCG--------AGgCCCCCCUGCUau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.