Results 21 - 40 of 77 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5885 | 5' | -62.4 | NC_001806.1 | + | 25506 | 0.67 | 0.569645 |
Target: 5'- cCCCCGaGGgaGCGCGG-GAcGCG-CCGGg -3' miRNA: 3'- -GGGGC-CCg-UGCGCCaCU-CGUaGGCCa -5' |
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5885 | 5' | -62.4 | NC_001806.1 | + | 25877 | 0.7 | 0.405325 |
Target: 5'- cCCCgCGGGCGCGCgcgcgcgcaaaaaaGGcGGGCggcgGUCCGGg -3' miRNA: 3'- -GGG-GCCCGUGCG--------------CCaCUCG----UAGGCCa -5' |
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5885 | 5' | -62.4 | NC_001806.1 | + | 27845 | 0.66 | 0.627709 |
Target: 5'- uCCCCGGGgAcggggccgcccCGCGGUGGGCcugccucccCUGGg -3' miRNA: 3'- -GGGGCCCgU-----------GCGCCACUCGua-------GGCCa -5' |
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5885 | 5' | -62.4 | NC_001806.1 | + | 29962 | 0.71 | 0.375814 |
Target: 5'- -gCCGcGGCGcCGCGGgGGGCGUCUGGc -3' miRNA: 3'- ggGGC-CCGU-GCGCCaCUCGUAGGCCa -5' |
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5885 | 5' | -62.4 | NC_001806.1 | + | 30179 | 0.66 | 0.617987 |
Target: 5'- gCCCCGGGCcccccgcgucCGCGGcc-GCGUCgGGa -3' miRNA: 3'- -GGGGCCCGu---------GCGCCacuCGUAGgCCa -5' |
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5885 | 5' | -62.4 | NC_001806.1 | + | 32958 | 0.69 | 0.467611 |
Target: 5'- gCCCCGGGC-CGgGGccccuUGGGuCcgCCGGg -3' miRNA: 3'- -GGGGCCCGuGCgCC-----ACUC-GuaGGCCa -5' |
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5885 | 5' | -62.4 | NC_001806.1 | + | 34351 | 0.66 | 0.617987 |
Target: 5'- cCCCCGGGgaACGgGGgaccggggcUGGGUAUCCcgaGGUg -3' miRNA: 3'- -GGGGCCCg-UGCgCC---------ACUCGUAGG---CCA- -5' |
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5885 | 5' | -62.4 | NC_001806.1 | + | 38282 | 0.69 | 0.467611 |
Target: 5'- aCCgCCGGGCGaGCGGcgucGAGUAucggcUCCGGUc -3' miRNA: 3'- -GG-GGCCCGUgCGCCa---CUCGU-----AGGCCA- -5' |
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5885 | 5' | -62.4 | NC_001806.1 | + | 41392 | 0.66 | 0.666561 |
Target: 5'- gCCCUGGGCGCggauGCGauccGUGAGCcgCCu-- -3' miRNA: 3'- -GGGGCCCGUG----CGC----CACUCGuaGGcca -5' |
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5885 | 5' | -62.4 | NC_001806.1 | + | 41846 | 0.66 | 0.656868 |
Target: 5'- gCCCCGGGCGCGUacGUgcGAGCGcgCaGGUa -3' miRNA: 3'- -GGGGCCCGUGCGc-CA--CUCGUa-GgCCA- -5' |
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5885 | 5' | -62.4 | NC_001806.1 | + | 44455 | 0.66 | 0.666561 |
Target: 5'- gCCCGGcGUcCGCGuG-GAGCAUgCGGa -3' miRNA: 3'- gGGGCC-CGuGCGC-CaCUCGUAgGCCa -5' |
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5885 | 5' | -62.4 | NC_001806.1 | + | 45294 | 0.67 | 0.588903 |
Target: 5'- aCgCGGGCccGCGCGGgGAGCcgcCCGGc -3' miRNA: 3'- gGgGCCCG--UGCGCCaCUCGua-GGCCa -5' |
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5885 | 5' | -62.4 | NC_001806.1 | + | 49368 | 0.66 | 0.656868 |
Target: 5'- gCCCCGGGCccgAUGCGGcccGuAGCcagUCGGUg -3' miRNA: 3'- -GGGGCCCG---UGCGCCa--C-UCGua-GGCCA- -5' |
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5885 | 5' | -62.4 | NC_001806.1 | + | 50644 | 0.7 | 0.441396 |
Target: 5'- gCCCGGGCGUGCGGgGAcgcGCA-CCGGc -3' miRNA: 3'- gGGGCCCGUGCGCCaCU---CGUaGGCCa -5' |
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5885 | 5' | -62.4 | NC_001806.1 | + | 55719 | 0.69 | 0.467611 |
Target: 5'- cCUCCGGGCugGCGGcUGAc---CCGGg -3' miRNA: 3'- -GGGGCCCGugCGCC-ACUcguaGGCCa -5' |
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5885 | 5' | -62.4 | NC_001806.1 | + | 58475 | 0.7 | 0.398821 |
Target: 5'- aCCCCGaGCucgaACGUGGUGGGCGUggcacuaucggccCCGGUc -3' miRNA: 3'- -GGGGCcCG----UGCGCCACUCGUA-------------GGCCA- -5' |
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5885 | 5' | -62.4 | NC_001806.1 | + | 62837 | 0.66 | 0.627709 |
Target: 5'- gCgCCGaGGCG-GCGGUGGGCAUCagcgcgacaaacUGGUg -3' miRNA: 3'- -GgGGC-CCGUgCGCCACUCGUAG------------GCCA- -5' |
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5885 | 5' | -62.4 | NC_001806.1 | + | 62925 | 0.66 | 0.627709 |
Target: 5'- cCCUCGuaC-CGCGGccGGGCGUCCGGa -3' miRNA: 3'- -GGGGCccGuGCGCCa-CUCGUAGGCCa -5' |
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5885 | 5' | -62.4 | NC_001806.1 | + | 64965 | 0.66 | 0.676229 |
Target: 5'- gCCCGGGC-CGgGGgucccgGGGCAaacaUCCaGGg -3' miRNA: 3'- gGGGCCCGuGCgCCa-----CUCGU----AGG-CCa -5' |
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5885 | 5' | -62.4 | NC_001806.1 | + | 65661 | 0.67 | 0.588903 |
Target: 5'- cCCCUGGGUggcuGCGCuG-GGGCcgCCGGc -3' miRNA: 3'- -GGGGCCCG----UGCGcCaCUCGuaGGCCa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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