miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5893 3' -66.3 NC_001806.1 + 740 0.77 0.081609
Target:  5'- cGUCcCGCGCUCCCUCgGGGGGGUUCGGg -3'
miRNA:   3'- -CGGaGCGCGGGGGGG-CUCCCCGAGUC- -5'
5893 3' -66.3 NC_001806.1 + 5039 0.77 0.081609
Target:  5'- cGUCUcCGCGCCCCaCCCGAGGGccccccGCUCGu -3'
miRNA:   3'- -CGGA-GCGCGGGG-GGGCUCCC------CGAGUc -5'
5893 3' -66.3 NC_001806.1 + 151733 0.74 0.133244
Target:  5'- gGCCgCGCGCgaCCCCCGGGGGGUg--- -3'
miRNA:   3'- -CGGaGCGCGg-GGGGGCUCCCCGaguc -5'
5893 3' -66.3 NC_001806.1 + 23 0.74 0.133244
Target:  5'- gGCCgCGCGCgaCCCCCGGGGGGUg--- -3'
miRNA:   3'- -CGGaGCGCGg-GGGGGCUCCCCGaguc -5'
5893 3' -66.3 NC_001806.1 + 358 0.73 0.16917
Target:  5'- cGCCUuuuuugcgcgcgCGCGCgCCCgCGGGGGGCcCGGg -3'
miRNA:   3'- -CGGA------------GCGCGgGGGgGCUCCCCGaGUC- -5'
5893 3' -66.3 NC_001806.1 + 152068 0.73 0.16917
Target:  5'- cGCCUuuuuugcgcgcgCGCGCgCCCgCGGGGGGCcCGGg -3'
miRNA:   3'- -CGGA------------GCGCGgGGGgGCUCCCCGaGUC- -5'
5893 3' -66.3 NC_001806.1 + 25496 0.73 0.177325
Target:  5'- uGCC-CGaaCCCCCCCGAGGGaGCgCGGg -3'
miRNA:   3'- -CGGaGCgcGGGGGGGCUCCC-CGaGUC- -5'
5893 3' -66.3 NC_001806.1 + 29961 0.73 0.183241
Target:  5'- aGCCgcggCGCcgcggggggcgucugGCCCCUCCGGGGGGgUUGGg -3'
miRNA:   3'- -CGGa---GCG---------------CGGGGGGGCUCCCCgAGUC- -5'
5893 3' -66.3 NC_001806.1 + 93891 0.72 0.198797
Target:  5'- gGCC-CGCgggagGCCgCCCCGAagagggggaccccGGGGCUCAGc -3'
miRNA:   3'- -CGGaGCG-----CGGgGGGGCU-------------CCCCGAGUC- -5'
5893 3' -66.3 NC_001806.1 + 5914 0.71 0.223516
Target:  5'- cGCCUUGcCGCCCCCCCauuGGccGGCgggCGGg -3'
miRNA:   3'- -CGGAGC-GCGGGGGGGcu-CC--CCGa--GUC- -5'
5893 3' -66.3 NC_001806.1 + 85969 0.71 0.223516
Target:  5'- gGCUUgGaCGCgCCUCCCGGGGGGUcggCAGg -3'
miRNA:   3'- -CGGAgC-GCG-GGGGGGCUCCCCGa--GUC- -5'
5893 3' -66.3 NC_001806.1 + 29803 0.71 0.239245
Target:  5'- cGCCgcCGCGCCCCCCgUGAcgggcGGGGCgucucacgCAGc -3'
miRNA:   3'- -CGGa-GCGCGGGGGG-GCU-----CCCCGa-------GUC- -5'
5893 3' -66.3 NC_001806.1 + 4119 0.71 0.244142
Target:  5'- cGCCUCggGCGCCCCCCaGAGGcccgggcGGCUg-- -3'
miRNA:   3'- -CGGAG--CGCGGGGGGgCUCC-------CCGAguc -5'
5893 3' -66.3 NC_001806.1 + 147317 0.71 0.246897
Target:  5'- cCCUggcCGCGCCCCCCCGgcccugagucggaggGGGGGUgcgUCGc -3'
miRNA:   3'- cGGA---GCGCGGGGGGGC---------------UCCCCG---AGUc -5'
5893 3' -66.3 NC_001806.1 + 47183 0.7 0.249679
Target:  5'- cGCUUCGCcaccGCCCCCCCGcccggccGGGGGUccCAa -3'
miRNA:   3'- -CGGAGCG----CGGGGGGGC-------UCCCCGa-GUc -5'
5893 3' -66.3 NC_001806.1 + 99982 0.7 0.250238
Target:  5'- cGCCUCGaGCCUCCCCGGGGuaGUaCGGg -3'
miRNA:   3'- -CGGAGCgCGGGGGGGCUCCc-CGaGUC- -5'
5893 3' -66.3 NC_001806.1 + 148750 0.7 0.250238
Target:  5'- cCCUCGuCGCuCCCCCCGuccucucgaggGGGGGCg--- -3'
miRNA:   3'- cGGAGC-GCG-GGGGGGC-----------UCCCCGaguc -5'
5893 3' -66.3 NC_001806.1 + 126483 0.7 0.254183
Target:  5'- aCUUCGCGCCCgggcgcguccccggCCCgGAGGaGGCUCu- -3'
miRNA:   3'- cGGAGCGCGGG--------------GGGgCUCC-CCGAGuc -5'
5893 3' -66.3 NC_001806.1 + 135242 0.7 0.261645
Target:  5'- aGCCcgugaugggCGCGCCUaCCCGGGGGGCcCGa -3'
miRNA:   3'- -CGGa--------GCGCGGGgGGGCUCCCCGaGUc -5'
5893 3' -66.3 NC_001806.1 + 20588 0.7 0.263976
Target:  5'- cCCUCGCGCCCCgCCCauggcagauggcgcgGAugggcGGGGC-CGGg -3'
miRNA:   3'- cGGAGCGCGGGG-GGG---------------CU-----CCCCGaGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.