Results 1 - 20 of 68 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5893 | 3' | -66.3 | NC_001806.1 | + | 740 | 0.77 | 0.081609 |
Target: 5'- cGUCcCGCGCUCCCUCgGGGGGGUUCGGg -3' miRNA: 3'- -CGGaGCGCGGGGGGG-CUCCCCGAGUC- -5' |
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5893 | 3' | -66.3 | NC_001806.1 | + | 80313 | 0.67 | 0.414469 |
Target: 5'- cGCCcaccacaUCuGCGCgCCCCCG-GGGGCauuugaccgUCAGc -3' miRNA: 3'- -CGG-------AG-CGCGgGGGGGCuCCCCG---------AGUC- -5' |
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5893 | 3' | -66.3 | NC_001806.1 | + | 89088 | 0.67 | 0.407195 |
Target: 5'- cCCggCGCGCUUCUCCGGGGGGgcaucCUCGu -3' miRNA: 3'- cGGa-GCGCGGGGGGGCUCCCC-----GAGUc -5' |
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5893 | 3' | -66.3 | NC_001806.1 | + | 26965 | 0.67 | 0.407195 |
Target: 5'- cGCCUggCGCGCCgcggcucgugggCCCgCGAGcgggccgaccGGGCUCGGu -3' miRNA: 3'- -CGGA--GCGCGG------------GGGgGCUC----------CCCGAGUC- -5' |
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5893 | 3' | -66.3 | NC_001806.1 | + | 89030 | 0.67 | 0.399207 |
Target: 5'- cGCgCUCGU-CCCCCCCGcaguacaccuuGGGGGCg--- -3' miRNA: 3'- -CG-GAGCGcGGGGGGGC-----------UCCCCGaguc -5' |
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5893 | 3' | -66.3 | NC_001806.1 | + | 72480 | 0.67 | 0.399207 |
Target: 5'- gGCCaUCaCGCaCCCCCUGcGGGGCgagaucgCGGg -3' miRNA: 3'- -CGG-AGcGCG-GGGGGGCuCCCCGa------GUC- -5' |
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5893 | 3' | -66.3 | NC_001806.1 | + | 119026 | 0.67 | 0.383536 |
Target: 5'- cGCCguggcggCGCuGCgCCUUgCGuGGGGCUCGGg -3' miRNA: 3'- -CGGa------GCG-CG-GGGGgGCuCCCCGAGUC- -5' |
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5893 | 3' | -66.3 | NC_001806.1 | + | 42390 | 0.67 | 0.383536 |
Target: 5'- gGCCccCGCGCCCCCCagaCGcuGGGCcugaagCAGg -3' miRNA: 3'- -CGGa-GCGCGGGGGG---GCucCCCGa-----GUC- -5' |
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5893 | 3' | -66.3 | NC_001806.1 | + | 18507 | 0.68 | 0.375855 |
Target: 5'- gGCUggGaGCCCUCCUGGGGGGUcCAGu -3' miRNA: 3'- -CGGagCgCGGGGGGGCUCCCCGaGUC- -5' |
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5893 | 3' | -66.3 | NC_001806.1 | + | 13630 | 0.67 | 0.415282 |
Target: 5'- cGCCUggaugugguacaCGCGCCggaCCCCCGGaGGGUcggUCAGc -3' miRNA: 3'- -CGGA------------GCGCGG---GGGGGCUcCCCG---AGUC- -5' |
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5893 | 3' | -66.3 | NC_001806.1 | + | 17158 | 0.67 | 0.422645 |
Target: 5'- uGCCggUCGCuccaaggGCCCCCCCGGGaaggcGGGuCUguGg -3' miRNA: 3'- -CGG--AGCG-------CGGGGGGGCUC-----CCC-GAguC- -5' |
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5893 | 3' | -66.3 | NC_001806.1 | + | 30271 | 0.67 | 0.423468 |
Target: 5'- gGCCccCGCGCCccggCCCCCGGGGcGGagcCGGc -3' miRNA: 3'- -CGGa-GCGCGG----GGGGGCUCC-CCga-GUC- -5' |
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5893 | 3' | -66.3 | NC_001806.1 | + | 147166 | 0.66 | 0.474515 |
Target: 5'- aCCgaCG-GCCCCgCCCGAGGaGGCggaagCGGa -3' miRNA: 3'- cGGa-GCgCGGGG-GGGCUCC-CCGa----GUC- -5' |
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5893 | 3' | -66.3 | NC_001806.1 | + | 39814 | 0.66 | 0.474515 |
Target: 5'- --gUUGCGCCagCCCCCGuuggGGGGGUgcgUCGGg -3' miRNA: 3'- cggAGCGCGG--GGGGGC----UCCCCG---AGUC- -5' |
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5893 | 3' | -66.3 | NC_001806.1 | + | 3529 | 0.66 | 0.474515 |
Target: 5'- --gUCGuCGCCCCCCgCG-GGGGaggCGGg -3' miRNA: 3'- cggAGC-GCGGGGGG-GCuCCCCga-GUC- -5' |
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5893 | 3' | -66.3 | NC_001806.1 | + | 50477 | 0.66 | 0.472763 |
Target: 5'- uGUUUCGCGCCCugccccugggaagCCCCGcggucguGGGGGC-CGa -3' miRNA: 3'- -CGGAGCGCGGG-------------GGGGC-------UCCCCGaGUc -5' |
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5893 | 3' | -66.3 | NC_001806.1 | + | 4385 | 0.66 | 0.465788 |
Target: 5'- uCCUCGcCGCCgCCC---GGGGCUUGGg -3' miRNA: 3'- cGGAGC-GCGGgGGGgcuCCCCGAGUC- -5' |
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5893 | 3' | -66.3 | NC_001806.1 | + | 86366 | 0.66 | 0.46492 |
Target: 5'- --gUCGCGCCagccacuCCUCCGcGGGGcGCUCGGc -3' miRNA: 3'- cggAGCGCGG-------GGGGGC-UCCC-CGAGUC- -5' |
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5893 | 3' | -66.3 | NC_001806.1 | + | 30612 | 0.66 | 0.435087 |
Target: 5'- gGCgaCGCaCCCCCCCuccgacucagggccgGGGGGGCgCGGc -3' miRNA: 3'- -CGgaGCGcGGGGGGG---------------CUCCCCGaGUC- -5' |
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5893 | 3' | -66.3 | NC_001806.1 | + | 119629 | 0.67 | 0.423468 |
Target: 5'- gGCCccaGCGCCCCacgggCCCG-GGGGCg--- -3' miRNA: 3'- -CGGag-CGCGGGG-----GGGCuCCCCGaguc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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