miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5893 3' -66.3 NC_001806.1 + 23 0.74 0.133244
Target:  5'- gGCCgCGCGCgaCCCCCGGGGGGUg--- -3'
miRNA:   3'- -CGGaGCGCGg-GGGGGCUCCCCGaguc -5'
5893 3' -66.3 NC_001806.1 + 358 0.73 0.16917
Target:  5'- cGCCUuuuuugcgcgcgCGCGCgCCCgCGGGGGGCcCGGg -3'
miRNA:   3'- -CGGA------------GCGCGgGGGgGCUCCCCGaGUC- -5'
5893 3' -66.3 NC_001806.1 + 740 0.77 0.081609
Target:  5'- cGUCcCGCGCUCCCUCgGGGGGGUUCGGg -3'
miRNA:   3'- -CGGaGCGCGGGGGGG-CUCCCCGAGUC- -5'
5893 3' -66.3 NC_001806.1 + 1581 0.69 0.298401
Target:  5'- cGCCUCGCGCCCCagcgCCaCGuacacGGGCcgCAGc -3'
miRNA:   3'- -CGGAGCGCGGGG----GG-GCuc---CCCGa-GUC- -5'
5893 3' -66.3 NC_001806.1 + 2296 0.68 0.331991
Target:  5'- -aCUCcgGCgGCCCCCCCGAGGccccgccgccGGC-CAGg -3'
miRNA:   3'- cgGAG--CG-CGGGGGGGCUCC----------CCGaGUC- -5'
5893 3' -66.3 NC_001806.1 + 2968 0.69 0.298401
Target:  5'- uGCgCUUGCGCCCCUCCcgcggcgcgggGAGGcGGCggCGGc -3'
miRNA:   3'- -CG-GAGCGCGGGGGGG-----------CUCC-CCGa-GUC- -5'
5893 3' -66.3 NC_001806.1 + 3327 0.68 0.339034
Target:  5'- gGCCcgCGgGUCCCUCCGgccgcgGGGGGCUggCGGg -3'
miRNA:   3'- -CGGa-GCgCGGGGGGGC------UCCCCGA--GUC- -5'
5893 3' -66.3 NC_001806.1 + 3529 0.66 0.474515
Target:  5'- --gUCGuCGCCCCCCgCG-GGGGaggCGGg -3'
miRNA:   3'- cggAGC-GCGGGGGG-GCuCCCCga-GUC- -5'
5893 3' -66.3 NC_001806.1 + 4119 0.71 0.244142
Target:  5'- cGCCUCggGCGCCCCCCaGAGGcccgggcGGCUg-- -3'
miRNA:   3'- -CGGAG--CGCGGGGGGgCUCC-------CCGAguc -5'
5893 3' -66.3 NC_001806.1 + 4385 0.66 0.465788
Target:  5'- uCCUCGcCGCCgCCC---GGGGCUUGGg -3'
miRNA:   3'- cGGAGC-GCGGgGGGgcuCCCCGAGUC- -5'
5893 3' -66.3 NC_001806.1 + 5039 0.77 0.081609
Target:  5'- cGUCUcCGCGCCCCaCCCGAGGGccccccGCUCGu -3'
miRNA:   3'- -CGGA-GCGCGGGG-GGGCUCCC------CGAGUc -5'
5893 3' -66.3 NC_001806.1 + 5523 0.7 0.273471
Target:  5'- gGCCcCcCGCCCCCCCGGcGGGCcCAc -3'
miRNA:   3'- -CGGaGcGCGGGGGGGCUcCCCGaGUc -5'
5893 3' -66.3 NC_001806.1 + 5914 0.71 0.223516
Target:  5'- cGCCUUGcCGCCCCCCCauuGGccGGCgggCGGg -3'
miRNA:   3'- -CGGAGC-GCGGGGGGGcu-CC--CCGa--GUC- -5'
5893 3' -66.3 NC_001806.1 + 10764 0.68 0.339034
Target:  5'- cGUCUCGgGCaCCUgCuuGGGGGGCaUCAGc -3'
miRNA:   3'- -CGGAGCgCG-GGG-GggCUCCCCG-AGUC- -5'
5893 3' -66.3 NC_001806.1 + 13630 0.67 0.415282
Target:  5'- cGCCUggaugugguacaCGCGCCggaCCCCCGGaGGGUcggUCAGc -3'
miRNA:   3'- -CGGA------------GCGCGG---GGGGGCUcCCCG---AGUC- -5'
5893 3' -66.3 NC_001806.1 + 17158 0.67 0.422645
Target:  5'- uGCCggUCGCuccaaggGCCCCCCCGGGaaggcGGGuCUguGg -3'
miRNA:   3'- -CGG--AGCG-------CGGGGGGGCUC-----CCC-GAguC- -5'
5893 3' -66.3 NC_001806.1 + 18507 0.68 0.375855
Target:  5'- gGCUggGaGCCCUCCUGGGGGGUcCAGu -3'
miRNA:   3'- -CGGagCgCGGGGGGGCUCCCCGaGUC- -5'
5893 3' -66.3 NC_001806.1 + 20170 0.68 0.346184
Target:  5'- cGCC-CGgGCCcgCCCCCGGGGccGGCgCGGa -3'
miRNA:   3'- -CGGaGCgCGG--GGGGGCUCC--CCGaGUC- -5'
5893 3' -66.3 NC_001806.1 + 20588 0.7 0.263976
Target:  5'- cCCUCGCGCCCCgCCCauggcagauggcgcgGAugggcGGGGC-CGGg -3'
miRNA:   3'- cGGAGCGCGGGG-GGG---------------CU-----CCCCGaGUC- -5'
5893 3' -66.3 NC_001806.1 + 22709 0.7 0.273471
Target:  5'- cGCC-CGCcUCCCCCgCGGGGGGCg--- -3'
miRNA:   3'- -CGGaGCGcGGGGGG-GCUCCCCGaguc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.