miRNA display CGI


Results 1 - 20 of 49 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5893 5' -59.1 NC_001806.1 + 50392 0.72 0.433381
Target:  5'- gUCCAGugGCucucgGUGGUCGuGGGGGCGc -3'
miRNA:   3'- aAGGUCugCG-----CGCCAGUcUUCCCGCa -5'
5893 5' -59.1 NC_001806.1 + 30386 0.71 0.44589
Target:  5'- -gCCGGgcgcgugcgacggugGCGCGCGGcUCGGggGGGCc- -3'
miRNA:   3'- aaGGUC---------------UGCGCGCC-AGUCuuCCCGca -5'
5893 5' -59.1 NC_001806.1 + 25916 0.71 0.460429
Target:  5'- gUCCGGgcggcgugcgcGCGCGCGG-CGGGcgugGGGGCGg -3'
miRNA:   3'- aAGGUC-----------UGCGCGCCaGUCU----UCCCGCa -5'
5893 5' -59.1 NC_001806.1 + 98834 0.71 0.478949
Target:  5'- -cCCGGACGCGUccgGGgagggCgAGGAGGGCGg -3'
miRNA:   3'- aaGGUCUGCGCG---CCa----G-UCUUCCCGCa -5'
5893 5' -59.1 NC_001806.1 + 98600 0.7 0.507391
Target:  5'- -aCCugGGGCGCGCGGUCGGcaAGGuGGUGa -3'
miRNA:   3'- aaGG--UCUGCGCGCCAGUC--UUC-CCGCa -5'
5893 5' -59.1 NC_001806.1 + 24702 0.7 0.517031
Target:  5'- -cCCGGugGCGCGGgccgCGGAGGGacuuuuGCGc -3'
miRNA:   3'- aaGGUCugCGCGCCa---GUCUUCC------CGCa -5'
5893 5' -59.1 NC_001806.1 + 26817 0.7 0.517031
Target:  5'- -gCCugcGACGCGCGGgCGGGgagGGGGCGc -3'
miRNA:   3'- aaGGu--CUGCGCGCCaGUCU---UCCCGCa -5'
5893 5' -59.1 NC_001806.1 + 71529 0.7 0.536526
Target:  5'- gUgCGGGCGgGCGGggGGggGGGUGg -3'
miRNA:   3'- aAgGUCUGCgCGCCagUCuuCCCGCa -5'
5893 5' -59.1 NC_001806.1 + 2631 0.7 0.546369
Target:  5'- -gCCAcGGCGCGCGGggagCAGuaggccuccAGGGCGg -3'
miRNA:   3'- aaGGU-CUGCGCGCCa---GUCu--------UCCCGCa -5'
5893 5' -59.1 NC_001806.1 + 13163 0.69 0.556269
Target:  5'- ---gGGAUGCGCaG-CGGGAGGGCGUa -3'
miRNA:   3'- aaggUCUGCGCGcCaGUCUUCCCGCA- -5'
5893 5' -59.1 NC_001806.1 + 120307 0.69 0.593297
Target:  5'- gUCCuggcacaccuggggGGACgGgGCGGUCGGggGcGGCGg -3'
miRNA:   3'- aAGG--------------UCUG-CgCGCCAGUCuuC-CCGCa -5'
5893 5' -59.1 NC_001806.1 + 85748 0.69 0.606414
Target:  5'- gUCCGGAgcCGCGCGGcCAcgucguccGggGGGUGc -3'
miRNA:   3'- aAGGUCU--GCGCGCCaGU--------CuuCCCGCa -5'
5893 5' -59.1 NC_001806.1 + 132168 0.69 0.606414
Target:  5'- aUCCcGACGCGCGGcUGGcguGGGCGc -3'
miRNA:   3'- aAGGuCUGCGCGCCaGUCuu-CCCGCa -5'
5893 5' -59.1 NC_001806.1 + 2832 0.69 0.606414
Target:  5'- -cCCGGGgGCGUGG--AGggGGGCGc -3'
miRNA:   3'- aaGGUCUgCGCGCCagUCuuCCCGCa -5'
5893 5' -59.1 NC_001806.1 + 119486 0.68 0.623613
Target:  5'- -aCCGGGCGUGCGGccuguggcguugcaUCGGGgcuacgccAGGGCGc -3'
miRNA:   3'- aaGGUCUGCGCGCC--------------AGUCU--------UCCCGCa -5'
5893 5' -59.1 NC_001806.1 + 10364 0.68 0.626651
Target:  5'- cUUCGGGgGCGCuGGgccaagaccUCGGggGGGCGg -3'
miRNA:   3'- aAGGUCUgCGCG-CC---------AGUCuuCCCGCa -5'
5893 5' -59.1 NC_001806.1 + 52540 0.68 0.636779
Target:  5'- -gCCGGACGaCGUGGUCcGcGGGGCc- -3'
miRNA:   3'- aaGGUCUGC-GCGCCAGuCuUCCCGca -5'
5893 5' -59.1 NC_001806.1 + 151176 0.68 0.657017
Target:  5'- cUCCGcgguGACGCGCaGG-CGGA-GGGCGa -3'
miRNA:   3'- aAGGU----CUGCGCG-CCaGUCUuCCCGCa -5'
5893 5' -59.1 NC_001806.1 + 99572 0.68 0.666103
Target:  5'- aUCCGGugGCggcgggggggaacGCGGgcuccgucggUAGAGGGGCGc -3'
miRNA:   3'- aAGGUCugCG-------------CGCCa---------GUCUUCCCGCa -5'
5893 5' -59.1 NC_001806.1 + 22282 0.68 0.667111
Target:  5'- cUCCAGaacccGCGCGUGGUCcccGGGGaCGUg -3'
miRNA:   3'- aAGGUC-----UGCGCGCCAGucuUCCC-GCA- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.