Results 1 - 20 of 49 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5893 | 5' | -59.1 | NC_001806.1 | + | 50392 | 0.72 | 0.433381 |
Target: 5'- gUCCAGugGCucucgGUGGUCGuGGGGGCGc -3' miRNA: 3'- aAGGUCugCG-----CGCCAGUcUUCCCGCa -5' |
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5893 | 5' | -59.1 | NC_001806.1 | + | 56769 | 0.66 | 0.74614 |
Target: 5'- --aCAGACGCgGCGGUgGucGGGGCa- -3' miRNA: 3'- aagGUCUGCG-CGCCAgUcuUCCCGca -5' |
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5893 | 5' | -59.1 | NC_001806.1 | + | 35124 | 0.66 | 0.74614 |
Target: 5'- gUCCcGugGaCGCGGcccUCGGuuGGGCGa -3' miRNA: 3'- aAGGuCugC-GCGCC---AGUCuuCCCGCa -5' |
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5893 | 5' | -59.1 | NC_001806.1 | + | 50017 | 0.66 | 0.74614 |
Target: 5'- ---gAGGCGCGCgGGUCuGAccuggacgacAGGGCGg -3' miRNA: 3'- aaggUCUGCGCG-CCAGuCU----------UCCCGCa -5' |
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5893 | 5' | -59.1 | NC_001806.1 | + | 37792 | 0.66 | 0.74614 |
Target: 5'- -cCgGGGCGCGgGGguccgcgggCGGggGGGCa- -3' miRNA: 3'- aaGgUCUGCGCgCCa--------GUCuuCCCGca -5' |
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5893 | 5' | -59.1 | NC_001806.1 | + | 89760 | 0.66 | 0.73651 |
Target: 5'- -cCCAccggcugauGACGCGCGGggcgugGGAGGGGCu- -3' miRNA: 3'- aaGGU---------CUGCGCGCCag----UCUUCCCGca -5' |
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5893 | 5' | -59.1 | NC_001806.1 | + | 49473 | 0.67 | 0.724838 |
Target: 5'- gUCCcgucGACGCGCGGgcuauuuuGGGGCGg -3' miRNA: 3'- aAGGu---CUGCGCGCCagucu---UCCCGCa -5' |
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5893 | 5' | -59.1 | NC_001806.1 | + | 91007 | 0.67 | 0.716993 |
Target: 5'- --gCGGGCGCGaCGGcggCGGcAAGGGCGc -3' miRNA: 3'- aagGUCUGCGC-GCCa--GUC-UUCCCGCa -5' |
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5893 | 5' | -59.1 | NC_001806.1 | + | 59148 | 0.67 | 0.716993 |
Target: 5'- -gCCGGGCcggggucucggGUGCGGgacgCGGAgGGGGCGUa -3' miRNA: 3'- aaGGUCUG-----------CGCGCCa---GUCU-UCCCGCA- -5' |
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5893 | 5' | -59.1 | NC_001806.1 | + | 57741 | 0.66 | 0.74614 |
Target: 5'- cUCCGGGCGUcuggaGCGG-CGGGAcGGGCc- -3' miRNA: 3'- aAGGUCUGCG-----CGCCaGUCUU-CCCGca -5' |
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5893 | 5' | -59.1 | NC_001806.1 | + | 128562 | 0.66 | 0.74614 |
Target: 5'- gUCCAGG-GCGCGGUCguagcgGGAGGucacGGCGc -3' miRNA: 3'- aAGGUCUgCGCGCCAG------UCUUC----CCGCa -5' |
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5893 | 5' | -59.1 | NC_001806.1 | + | 9823 | 0.66 | 0.74614 |
Target: 5'- aUCCGcGcCGCGCuGUgGGAGGGGCu- -3' miRNA: 3'- aAGGU-CuGCGCGcCAgUCUUCCCGca -5' |
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5893 | 5' | -59.1 | NC_001806.1 | + | 39276 | 0.66 | 0.765097 |
Target: 5'- -aCCAgGugGUGaUGGUCAGAaacAGGGgGUa -3' miRNA: 3'- aaGGU-CugCGC-GCCAGUCU---UCCCgCA- -5' |
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5893 | 5' | -59.1 | NC_001806.1 | + | 149238 | 0.66 | 0.755672 |
Target: 5'- cUCCAGACGCacCGGagUCGGggGucccacGGCGUc -3' miRNA: 3'- aAGGUCUGCGc-GCC--AGUCuuC------CCGCA- -5' |
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5893 | 5' | -59.1 | NC_001806.1 | + | 52712 | 0.66 | 0.755672 |
Target: 5'- gUUCCGGAggcgcCGCGCGGaCGGcgcGGGGCc- -3' miRNA: 3'- -AAGGUCU-----GCGCGCCaGUCu--UCCCGca -5' |
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5893 | 5' | -59.1 | NC_001806.1 | + | 28378 | 0.66 | 0.755672 |
Target: 5'- -aCCGGGgGCGCcauGUUAGggGGuGCGg -3' miRNA: 3'- aaGGUCUgCGCGc--CAGUCuuCC-CGCa -5' |
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5893 | 5' | -59.1 | NC_001806.1 | + | 147775 | 0.66 | 0.755672 |
Target: 5'- --gCGGACGCGgGGggccCGGGgcggGGGGCGg -3' miRNA: 3'- aagGUCUGCGCgCCa---GUCU----UCCCGCa -5' |
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5893 | 5' | -59.1 | NC_001806.1 | + | 126830 | 0.66 | 0.755672 |
Target: 5'- --gCAGGCaccgcaccaGCGCGG--AGGAGGGCGUa -3' miRNA: 3'- aagGUCUG---------CGCGCCagUCUUCCCGCA- -5' |
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5893 | 5' | -59.1 | NC_001806.1 | + | 120188 | 0.66 | 0.755672 |
Target: 5'- -aCCAacGCGCGUGGUUGGggGaGGUGa -3' miRNA: 3'- aaGGUc-UGCGCGCCAGUCuuC-CCGCa -5' |
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5893 | 5' | -59.1 | NC_001806.1 | + | 38382 | 0.66 | 0.749965 |
Target: 5'- aUUCCAGGuCGuCGCGGcggcucuccgccggcUCGGggGGGUc- -3' miRNA: 3'- -AAGGUCU-GC-GCGCC---------------AGUCuuCCCGca -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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