miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5893 5' -59.1 NC_001806.1 + 2631 0.7 0.546369
Target:  5'- -gCCAcGGCGCGCGGggagCAGuaggccuccAGGGCGg -3'
miRNA:   3'- aaGGU-CUGCGCGCCa---GUCu--------UCCCGCa -5'
5893 5' -59.1 NC_001806.1 + 2832 0.69 0.606414
Target:  5'- -cCCGGGgGCGUGG--AGggGGGCGc -3'
miRNA:   3'- aaGGUCUgCGCGCCagUCuuCCCGCa -5'
5893 5' -59.1 NC_001806.1 + 2853 0.67 0.716993
Target:  5'- --gCGGGCGCGgGG--AGggGGGCGc -3'
miRNA:   3'- aagGUCUGCGCgCCagUCuuCCCGCa -5'
5893 5' -59.1 NC_001806.1 + 9209 0.67 0.706133
Target:  5'- -gCgAGG-GCGCGGUCGacguggcGAGGGGCGg -3'
miRNA:   3'- aaGgUCUgCGCGCCAGU-------CUUCCCGCa -5'
5893 5' -59.1 NC_001806.1 + 9823 0.66 0.74614
Target:  5'- aUCCGcGcCGCGCuGUgGGAGGGGCu- -3'
miRNA:   3'- aAGGU-CuGCGCGcCAgUCUUCCCGca -5'
5893 5' -59.1 NC_001806.1 + 10364 0.68 0.626651
Target:  5'- cUUCGGGgGCGCuGGgccaagaccUCGGggGGGCGg -3'
miRNA:   3'- aAGGUCUgCGCG-CC---------AGUCuuCCCGCa -5'
5893 5' -59.1 NC_001806.1 + 10686 0.67 0.707124
Target:  5'- -cCCGGuCGCagauGgGGcCGGggGGGCGUa -3'
miRNA:   3'- aaGGUCuGCG----CgCCaGUCuuCCCGCA- -5'
5893 5' -59.1 NC_001806.1 + 13163 0.69 0.556269
Target:  5'- ---gGGAUGCGCaG-CGGGAGGGCGUa -3'
miRNA:   3'- aaggUCUGCGCGcCaGUCUUCCCGCA- -5'
5893 5' -59.1 NC_001806.1 + 17778 0.67 0.697192
Target:  5'- -cCCAGACGCGUGgGUgGGAGaaccguGGGcCGUg -3'
miRNA:   3'- aaGGUCUGCGCGC-CAgUCUU------CCC-GCA- -5'
5893 5' -59.1 NC_001806.1 + 22282 0.68 0.667111
Target:  5'- cUCCAGaacccGCGCGUGGUCcccGGGGaCGUg -3'
miRNA:   3'- aAGGUC-----UGCGCGCCAGucuUCCC-GCA- -5'
5893 5' -59.1 NC_001806.1 + 24702 0.7 0.517031
Target:  5'- -cCCGGugGCGCGGgccgCGGAGGGacuuuuGCGc -3'
miRNA:   3'- aaGGUCugCGCGCCa---GUCUUCC------CGCa -5'
5893 5' -59.1 NC_001806.1 + 25916 0.71 0.460429
Target:  5'- gUCCGGgcggcgugcgcGCGCGCGG-CGGGcgugGGGGCGg -3'
miRNA:   3'- aAGGUC-----------UGCGCGCCaGUCU----UCCCGCa -5'
5893 5' -59.1 NC_001806.1 + 26817 0.7 0.517031
Target:  5'- -gCCugcGACGCGCGGgCGGGgagGGGGCGc -3'
miRNA:   3'- aaGGu--CUGCGCGCCaGUCU---UCCCGCa -5'
5893 5' -59.1 NC_001806.1 + 28378 0.66 0.755672
Target:  5'- -aCCGGGgGCGCcauGUUAGggGGuGCGg -3'
miRNA:   3'- aaGGUCUgCGCGc--CAGUCuuCC-CGCa -5'
5893 5' -59.1 NC_001806.1 + 30386 0.71 0.44589
Target:  5'- -gCCGGgcgcgugcgacggugGCGCGCGGcUCGGggGGGCc- -3'
miRNA:   3'- aaGGUC---------------UGCGCGCC-AGUCuuCCCGca -5'
5893 5' -59.1 NC_001806.1 + 33116 0.67 0.686206
Target:  5'- gUCCGGACGgggcccggaccgcCGCGGUCGGGGgccccucgucccGGGcCGUa -3'
miRNA:   3'- aAGGUCUGC-------------GCGCCAGUCUU------------CCC-GCA- -5'
5893 5' -59.1 NC_001806.1 + 35124 0.66 0.74614
Target:  5'- gUCCcGugGaCGCGGcccUCGGuuGGGCGa -3'
miRNA:   3'- aAGGuCugC-GCGCC---AGUCuuCCCGCa -5'
5893 5' -59.1 NC_001806.1 + 37792 0.66 0.74614
Target:  5'- -cCgGGGCGCGgGGguccgcgggCGGggGGGCa- -3'
miRNA:   3'- aaGgUCUGCGCgCCa--------GUCuuCCCGca -5'
5893 5' -59.1 NC_001806.1 + 38382 0.66 0.749965
Target:  5'- aUUCCAGGuCGuCGCGGcggcucuccgccggcUCGGggGGGUc- -3'
miRNA:   3'- -AAGGUCU-GC-GCGCC---------------AGUCuuCCCGca -5'
5893 5' -59.1 NC_001806.1 + 39276 0.66 0.765097
Target:  5'- -aCCAgGugGUGaUGGUCAGAaacAGGGgGUa -3'
miRNA:   3'- aaGGU-CugCGC-GCCAGUCU---UCCCgCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.