miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5898 3' -56.8 NC_001806.1 + 25907 0.66 0.884431
Target:  5'- cGGGCGGCGGuccgGGCggCGugCGCG-CGc- -3'
miRNA:   3'- -UCCGCUGCC----UCGa-GCugGUGCaGUuu -5'
5898 3' -56.8 NC_001806.1 + 100819 0.66 0.884431
Target:  5'- cAGGUGGCGaaaGGGCgcgaUGGCgGCGUCGAGa -3'
miRNA:   3'- -UCCGCUGC---CUCGa---GCUGgUGCAGUUU- -5'
5898 3' -56.8 NC_001806.1 + 101939 0.66 0.883038
Target:  5'- aGGGCGGCcaggccgGGAaacagcugggucaGCUCGACCGCcggGUCGGc -3'
miRNA:   3'- -UCCGCUG-------CCU-------------CGAGCUGGUG---CAGUUu -5'
5898 3' -56.8 NC_001806.1 + 147476 0.66 0.87738
Target:  5'- gAGGCGGCGGAggggaGCggGGCgGCGcCGGAg -3'
miRNA:   3'- -UCCGCUGCCU-----CGagCUGgUGCaGUUU- -5'
5898 3' -56.8 NC_001806.1 + 113032 0.66 0.87738
Target:  5'- cGGCGGuCgGGGGCcuuaaccgCGACCcCGUCGAAg -3'
miRNA:   3'- uCCGCU-G-CCUCGa-------GCUGGuGCAGUUU- -5'
5898 3' -56.8 NC_001806.1 + 41258 0.66 0.87738
Target:  5'- aAGGgGACGG-GCUCcuucagGGCgAUGUCGAGa -3'
miRNA:   3'- -UCCgCUGCCuCGAG------CUGgUGCAGUUU- -5'
5898 3' -56.8 NC_001806.1 + 64486 0.66 0.874499
Target:  5'- aAGGCGAgCGGAccggcucaccagcgGCUUGaacccguugaccaGCCGCGUCAc- -3'
miRNA:   3'- -UCCGCU-GCCU--------------CGAGC-------------UGGUGCAGUuu -5'
5898 3' -56.8 NC_001806.1 + 63259 0.66 0.870112
Target:  5'- cGGCGucGCGGAGC-CGcCCAaaGUCAAAc -3'
miRNA:   3'- uCCGC--UGCCUCGaGCuGGUg-CAGUUU- -5'
5898 3' -56.8 NC_001806.1 + 103099 0.66 0.870112
Target:  5'- cGGCGcucgauaucgacGgGGAGCUCGGCCGCcugCAu- -3'
miRNA:   3'- uCCGC------------UgCCUCGAGCUGGUGca-GUuu -5'
5898 3' -56.8 NC_001806.1 + 151579 0.66 0.862629
Target:  5'- uGGCGGCGGcGGCg-GGCCAUGgagaCAGAg -3'
miRNA:   3'- uCCGCUGCC-UCGagCUGGUGCa---GUUU- -5'
5898 3' -56.8 NC_001806.1 + 146985 0.66 0.854938
Target:  5'- aAGGCGACaGGGC--GACCACGcUAGAg -3'
miRNA:   3'- -UCCGCUGcCUCGagCUGGUGCaGUUU- -5'
5898 3' -56.8 NC_001806.1 + 147713 0.66 0.847046
Target:  5'- gAGGCGgcgcucgcacgcACGGGGCcaCGGCCGCG-CGGGg -3'
miRNA:   3'- -UCCGC------------UGCCUCGa-GCUGGUGCaGUUU- -5'
5898 3' -56.8 NC_001806.1 + 57826 0.66 0.847046
Target:  5'- cGGGCGGgGGuGCggugggCGACCcCGUCu-- -3'
miRNA:   3'- -UCCGCUgCCuCGa-----GCUGGuGCAGuuu -5'
5898 3' -56.8 NC_001806.1 + 9227 0.66 0.847046
Target:  5'- uGGCGA-GGGGCgggCGGUCAUGUCGGGg -3'
miRNA:   3'- uCCGCUgCCUCGa--GCUGGUGCAGUUU- -5'
5898 3' -56.8 NC_001806.1 + 98038 0.66 0.847046
Target:  5'- cGGCGggugagcgcGCGGAuGCUCGGCgACGUgAu- -3'
miRNA:   3'- uCCGC---------UGCCU-CGAGCUGgUGCAgUuu -5'
5898 3' -56.8 NC_001806.1 + 95326 0.67 0.838958
Target:  5'- aGGGCGGCGcGGGCccCGACgACGaCGGGg -3'
miRNA:   3'- -UCCGCUGC-CUCGa-GCUGgUGCaGUUU- -5'
5898 3' -56.8 NC_001806.1 + 122361 0.67 0.830682
Target:  5'- uGGCGcgcugGCGGAagugGCgcaCGGCCGCGUCGc- -3'
miRNA:   3'- uCCGC-----UGCCU----CGa--GCUGGUGCAGUuu -5'
5898 3' -56.8 NC_001806.1 + 103820 0.67 0.804803
Target:  5'- cGGCGACGG-GCUCG-CUggGUCc-- -3'
miRNA:   3'- uCCGCUGCCuCGAGCuGGugCAGuuu -5'
5898 3' -56.8 NC_001806.1 + 6216 0.67 0.804803
Target:  5'- aGGGcCGuCGGAGCg-GACgGCGUCGGc -3'
miRNA:   3'- -UCC-GCuGCCUCGagCUGgUGCAGUUu -5'
5898 3' -56.8 NC_001806.1 + 76740 0.67 0.802134
Target:  5'- aAGGCG-CGcGAGCUCGacgugcaggcggucGCCugGUUGGAa -3'
miRNA:   3'- -UCCGCuGC-CUCGAGC--------------UGGugCAGUUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.