Results 1 - 20 of 181 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5902 | 5' | -52.9 | NC_001806.1 | + | 40160 | 0.8 | 0.361753 |
Target: 5'- gACGAAuguccGCGCCGUGGCgcgaCUCGCCCg -3' miRNA: 3'- gUGCUUuu---UGUGGUACCGa---GGGCGGG- -5' |
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5902 | 5' | -52.9 | NC_001806.1 | + | 58785 | 0.78 | 0.449097 |
Target: 5'- cCACGAGAGACaggaacgccGCCGUGGgUCCgCGCCa -3' miRNA: 3'- -GUGCUUUUUG---------UGGUACCgAGG-GCGGg -5' |
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5902 | 5' | -52.9 | NC_001806.1 | + | 22045 | 0.77 | 0.52667 |
Target: 5'- aGCGggGAgccguggcccgGCGCCG-GGCcCCCGCCCc -3' miRNA: 3'- gUGCuuUU-----------UGUGGUaCCGaGGGCGGG- -5' |
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5902 | 5' | -52.9 | NC_001806.1 | + | 132782 | 0.77 | 0.506749 |
Target: 5'- uGCGGGAGgcggugGCGCgGUGGCaUCCCGCCa -3' miRNA: 3'- gUGCUUUU------UGUGgUACCG-AGGGCGGg -5' |
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5902 | 5' | -52.9 | NC_001806.1 | + | 113425 | 0.77 | 0.52667 |
Target: 5'- gACGcc--ACGCCAUGGCcCCCGCCa -3' miRNA: 3'- gUGCuuuuUGUGGUACCGaGGGCGGg -5' |
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5902 | 5' | -52.9 | NC_001806.1 | + | 53389 | 0.77 | 0.52667 |
Target: 5'- aCGCGAAGGACGCCGgagccGGUgaacgccUCCGCCCg -3' miRNA: 3'- -GUGCUUUUUGUGGUa----CCGa------GGGCGGG- -5' |
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5902 | 5' | -52.9 | NC_001806.1 | + | 125845 | 0.76 | 0.533713 |
Target: 5'- cCGCGGGcccccggccgccgcGGACGCCGUGGCgccCCgGCCCc -3' miRNA: 3'- -GUGCUU--------------UUUGUGGUACCGa--GGgCGGG- -5' |
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5902 | 5' | -52.9 | NC_001806.1 | + | 57591 | 0.75 | 0.608732 |
Target: 5'- uGCGAGAGuugggcggcCGCCAaGGC-CCCGCCCc -3' miRNA: 3'- gUGCUUUUu--------GUGGUaCCGaGGGCGGG- -5' |
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5902 | 5' | -52.9 | NC_001806.1 | + | 68094 | 0.74 | 0.66083 |
Target: 5'- aCGCGAGccGGGCGUCAUGGCagaccgcggucUCCCGUCCg -3' miRNA: 3'- -GUGCUU--UUUGUGGUACCG-----------AGGGCGGG- -5' |
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5902 | 5' | -52.9 | NC_001806.1 | + | 90883 | 0.74 | 0.66083 |
Target: 5'- aACGu-GGACGCCGUGGCccgcgcggCCGCCCa -3' miRNA: 3'- gUGCuuUUUGUGGUACCGag------GGCGGG- -5' |
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5902 | 5' | -52.9 | NC_001806.1 | + | 19612 | 0.74 | 0.66083 |
Target: 5'- -cCGGAGGAcCACaGUGGCUucccCCCGCCCg -3' miRNA: 3'- guGCUUUUU-GUGgUACCGA----GGGCGGG- -5' |
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5902 | 5' | -52.9 | NC_001806.1 | + | 57711 | 0.74 | 0.66083 |
Target: 5'- uCGCGAAAguAACACgCGUaacGGCUUCCGCuCCg -3' miRNA: 3'- -GUGCUUU--UUGUG-GUA---CCGAGGGCG-GG- -5' |
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5902 | 5' | -52.9 | NC_001806.1 | + | 108840 | 0.73 | 0.722443 |
Target: 5'- aCAUGAGGAGCugcucgGCUGUGGUUCCgGCCg -3' miRNA: 3'- -GUGCUUUUUG------UGGUACCGAGGgCGGg -5' |
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5902 | 5' | -52.9 | NC_001806.1 | + | 35342 | 0.73 | 0.732486 |
Target: 5'- gCGCGggGAACGCguUuGCUgauccCCCGCCCc -3' miRNA: 3'- -GUGCuuUUUGUGguAcCGA-----GGGCGGG- -5' |
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5902 | 5' | -52.9 | NC_001806.1 | + | 1682 | 0.73 | 0.742439 |
Target: 5'- gCGCGccGGGCGCCAUGGCgucgguggUCCCcgaggccgccGCCCg -3' miRNA: 3'- -GUGCuuUUUGUGGUACCG--------AGGG----------CGGG- -5' |
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5902 | 5' | -52.9 | NC_001806.1 | + | 53258 | 0.73 | 0.71232 |
Target: 5'- -cCGGGccGCACCG-GGCcCCCGCCCc -3' miRNA: 3'- guGCUUuuUGUGGUaCCGaGGGCGGG- -5' |
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5902 | 5' | -52.9 | NC_001806.1 | + | 115074 | 0.73 | 0.732486 |
Target: 5'- gGCGGGAAAcCGCCuggGGCcggCCCaGCCCg -3' miRNA: 3'- gUGCUUUUU-GUGGua-CCGa--GGG-CGGG- -5' |
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5902 | 5' | -52.9 | NC_001806.1 | + | 3667 | 0.73 | 0.702125 |
Target: 5'- uGCGcc-GGCGCCggGGCUCCCcgcgGCCCc -3' miRNA: 3'- gUGCuuuUUGUGGuaCCGAGGG----CGGG- -5' |
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5902 | 5' | -52.9 | NC_001806.1 | + | 103483 | 0.73 | 0.716378 |
Target: 5'- --gGGAAAAC-CCgggggcuguugucggGUGGCUCCCGCCg -3' miRNA: 3'- gugCUUUUUGuGG---------------UACCGAGGGCGGg -5' |
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5902 | 5' | -52.9 | NC_001806.1 | + | 87299 | 0.73 | 0.742439 |
Target: 5'- gGCGGucucccgcGCGCCcuccGGCUCCCGCUCg -3' miRNA: 3'- gUGCUuuu-----UGUGGua--CCGAGGGCGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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