miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5911 3' -57.1 NC_001806.1 + 1950 0.66 0.882236
Target:  5'- cCgcgCCGCcggccagCgCACGGCGCACUgcacGGCGg -3'
miRNA:   3'- aGauaGGUGa------G-GUGCCGCGUGA----CCGC- -5'
5911 3' -57.1 NC_001806.1 + 29955 0.66 0.882236
Target:  5'- ----gUCGCgagCCGCGGCGCcGCggggGGCGu -3'
miRNA:   3'- agauaGGUGa--GGUGCCGCG-UGa---CCGC- -5'
5911 3' -57.1 NC_001806.1 + 151164 0.66 0.882236
Target:  5'- gCgcgCCagguGCUCCGCGGUGaCGCgcaGGCGg -3'
miRNA:   3'- aGauaGG----UGAGGUGCCGC-GUGa--CCGC- -5'
5911 3' -57.1 NC_001806.1 + 144778 0.66 0.882236
Target:  5'- gUCUGUCCcCU-CACGGgGCGaaGGCc -3'
miRNA:   3'- -AGAUAGGuGAgGUGCCgCGUgaCCGc -5'
5911 3' -57.1 NC_001806.1 + 76283 0.66 0.881538
Target:  5'- cCUGgccgCCGCcgcggaggagauaUCCGCGGUGCGCaacgacccGGCGg -3'
miRNA:   3'- aGAUa---GGUG-------------AGGUGCCGCGUGa-------CCGC- -5'
5911 3' -57.1 NC_001806.1 + 51313 0.66 0.875167
Target:  5'- cCUG-CCAaccugaUCCGCGGCGacaACgcgGGCGu -3'
miRNA:   3'- aGAUaGGUg-----AGGUGCCGCg--UGa--CCGC- -5'
5911 3' -57.1 NC_001806.1 + 78632 0.66 0.875167
Target:  5'- ----aCCGCacccCCGCGGCGCGCguuacGGCc -3'
miRNA:   3'- agauaGGUGa---GGUGCCGCGUGa----CCGc -5'
5911 3' -57.1 NC_001806.1 + 132680 0.66 0.867884
Target:  5'- -----gCGCUCCugGGgGC-CUGGCc -3'
miRNA:   3'- agauagGUGAGGugCCgCGuGACCGc -5'
5911 3' -57.1 NC_001806.1 + 116074 0.66 0.867884
Target:  5'- cCUG-CCGCguggauCGGCGCcauGCUGGCGg -3'
miRNA:   3'- aGAUaGGUGaggu--GCCGCG---UGACCGC- -5'
5911 3' -57.1 NC_001806.1 + 24841 0.66 0.867884
Target:  5'- cUCgg-CCACgggCCgcaGCGGCaccGUGCUGGCGg -3'
miRNA:   3'- -AGauaGGUGa--GG---UGCCG---CGUGACCGC- -5'
5911 3' -57.1 NC_001806.1 + 24606 0.66 0.852696
Target:  5'- ----cCCACUCgCACGccgccugcGCGCGCUGGgGc -3'
miRNA:   3'- agauaGGUGAG-GUGC--------CGCGUGACCgC- -5'
5911 3' -57.1 NC_001806.1 + 102634 0.66 0.844804
Target:  5'- -----aCACaaCACGGCGCACUcgaaGGCGg -3'
miRNA:   3'- agauagGUGagGUGCCGCGUGA----CCGC- -5'
5911 3' -57.1 NC_001806.1 + 70786 0.67 0.836721
Target:  5'- --gGUCCccggguuuuGCUUCAUGggucaguuucuaGCGCGCUGGCGg -3'
miRNA:   3'- agaUAGG---------UGAGGUGC------------CGCGUGACCGC- -5'
5911 3' -57.1 NC_001806.1 + 101022 0.67 0.83426
Target:  5'- gCgg-CgGC-CCGCGGCGCucgaaaaucgcagcGCUGGCGg -3'
miRNA:   3'- aGauaGgUGaGGUGCCGCG--------------UGACCGC- -5'
5911 3' -57.1 NC_001806.1 + 46422 0.67 0.828455
Target:  5'- gUCU-UCUGCgCCGCGGUcggGCGcCUGGCGg -3'
miRNA:   3'- -AGAuAGGUGaGGUGCCG---CGU-GACCGC- -5'
5911 3' -57.1 NC_001806.1 + 70628 0.67 0.820012
Target:  5'- ----aCCGaaaCCACGGCGCAcCUGGgGg -3'
miRNA:   3'- agauaGGUga-GGUGCCGCGU-GACCgC- -5'
5911 3' -57.1 NC_001806.1 + 1538 0.67 0.811401
Target:  5'- --aGUCC-CUCCGCGGCccGCGCcaccgGGCc -3'
miRNA:   3'- agaUAGGuGAGGUGCCG--CGUGa----CCGc -5'
5911 3' -57.1 NC_001806.1 + 24077 0.67 0.811401
Target:  5'- -gUGUCgGCg-CugGGCGCACagGGCGu -3'
miRNA:   3'- agAUAGgUGagGugCCGCGUGa-CCGC- -5'
5911 3' -57.1 NC_001806.1 + 137684 0.67 0.80263
Target:  5'- cCgg-CCAC-CCACGGgGCGCUGcCGg -3'
miRNA:   3'- aGauaGGUGaGGUGCCgCGUGACcGC- -5'
5911 3' -57.1 NC_001806.1 + 136376 0.67 0.801745
Target:  5'- -----gCGCUCCGCGGCcuccgcgaccgugGCcaGCUGGCGg -3'
miRNA:   3'- agauagGUGAGGUGCCG-------------CG--UGACCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.