miRNA display CGI


Results 21 - 40 of 189 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5911 5' -67.1 NC_001806.1 + 3519 0.69 0.276796
Target:  5'- cGGCgUCGGGGUCGucgccccCCGCGGgggaggcggGCGCGGc -3'
miRNA:   3'- -CCGgGGUCCCGGC-------GGCGCCa--------CGCGUC- -5'
5911 5' -67.1 NC_001806.1 + 3569 0.69 0.259651
Target:  5'- cGCCCCAGGGCgGCgaggaucccCGCGGcGCcguacccgGCGGg -3'
miRNA:   3'- cCGGGGUCCCGgCG---------GCGCCaCG--------CGUC- -5'
5911 5' -67.1 NC_001806.1 + 3795 0.76 0.091784
Target:  5'- uGGCCaCGGcGGCCGCCGCG-UGCGcCAGg -3'
miRNA:   3'- -CCGGgGUC-CCGGCGGCGCcACGC-GUC- -5'
5911 5' -67.1 NC_001806.1 + 3821 0.71 0.21634
Target:  5'- nGGCCCCAGccgaagcGGCCgGCCGCcaugGCGUAGc -3'
miRNA:   3'- -CCGGGGUC-------CCGG-CGGCGcca-CGCGUC- -5'
5911 5' -67.1 NC_001806.1 + 4062 0.68 0.336429
Target:  5'- gGGCgCCCAcacGGCCGCCG-GG-GCGCc- -3'
miRNA:   3'- -CCG-GGGUc--CCGGCGGCgCCaCGCGuc -5'
5911 5' -67.1 NC_001806.1 + 4309 0.67 0.380605
Target:  5'- cGGCCCguGGcGUCGCgGCcGGccaccgccGCGCGGg -3'
miRNA:   3'- -CCGGGguCC-CGGCGgCG-CCa-------CGCGUC- -5'
5911 5' -67.1 NC_001806.1 + 4373 0.7 0.247783
Target:  5'- aGGCCgCGGGgguccucGCCGCCGCccGGggcuuggGCGCGGc -3'
miRNA:   3'- -CCGGgGUCC-------CGGCGGCG--CCa------CGCGUC- -5'
5911 5' -67.1 NC_001806.1 + 4453 0.71 0.193254
Target:  5'- cGCCCgGGGGCUGCCGgCGccGCGCu- -3'
miRNA:   3'- cCGGGgUCCCGGCGGC-GCcaCGCGuc -5'
5911 5' -67.1 NC_001806.1 + 4738 0.68 0.322558
Target:  5'- cGGCCCCgggccGGGGCCcgGUCGCcGGcgGCGuCGGc -3'
miRNA:   3'- -CCGGGG-----UCCCGG--CGGCG-CCa-CGC-GUC- -5'
5911 5' -67.1 NC_001806.1 + 4822 0.68 0.32944
Target:  5'- gGGgUCCGGGGCggcgagGCCGCGGggucggGCGuCGGg -3'
miRNA:   3'- -CCgGGGUCCCGg-----CGGCGCCa-----CGC-GUC- -5'
5911 5' -67.1 NC_001806.1 + 5898 0.67 0.35804
Target:  5'- cGGCCCaAGGGCCGCCcGCcuUGcCGCc- -3'
miRNA:   3'- -CCGGGgUCCCGGCGG-CGccAC-GCGuc -5'
5911 5' -67.1 NC_001806.1 + 5950 0.66 0.445228
Target:  5'- cGCCCCaagggggcGGGGCCGCCG-GGUaaaagaagugaGaCGCGa -3'
miRNA:   3'- cCGGGG--------UCCCGGCGGCgCCA-----------C-GCGUc -5'
5911 5' -67.1 NC_001806.1 + 6072 0.72 0.180208
Target:  5'- cGGCCCCGggggcGGGCCcggGCgGCGGgGgGCGGg -3'
miRNA:   3'- -CCGGGGU-----CCCGG---CGgCGCCaCgCGUC- -5'
5911 5' -67.1 NC_001806.1 + 9188 0.7 0.248338
Target:  5'- aGCCCgGGGGUCGCgggUGUGGcgaggGCGCGGu -3'
miRNA:   3'- cCGGGgUCCCGGCG---GCGCCa----CGCGUC- -5'
5911 5' -67.1 NC_001806.1 + 9745 0.68 0.301911
Target:  5'- cGCCCCuaaccgcAGGG-CGCCGUGGguuggggGCGCGu -3'
miRNA:   3'- cCGGGG-------UCCCgGCGGCGCCa------CGCGUc -5'
5911 5' -67.1 NC_001806.1 + 13503 0.75 0.103529
Target:  5'- aGGCCCCgcggacaaucuggGGGGCCuCCGaCGGUGCGUuuAGg -3'
miRNA:   3'- -CCGGGG-------------UCCCGGcGGC-GCCACGCG--UC- -5'
5911 5' -67.1 NC_001806.1 + 15848 0.68 0.315785
Target:  5'- gGGCCCCuuuuGGGGCCGCgGgGG-GC-CGa -3'
miRNA:   3'- -CCGGGG----UCCCGGCGgCgCCaCGcGUc -5'
5911 5' -67.1 NC_001806.1 + 18844 0.68 0.311107
Target:  5'- uGCCCCAGGuuCCGCCGgacaccugcagcaaaCGGcaccacgUGCGCGGg -3'
miRNA:   3'- cCGGGGUCCc-GGCGGC---------------GCC-------ACGCGUC- -5'
5911 5' -67.1 NC_001806.1 + 20180 0.72 0.176036
Target:  5'- cGcCCCCGGGGCCGgCGCGGagucgggcacgGCGcCAGu -3'
miRNA:   3'- cC-GGGGUCCCGGCgGCGCCa----------CGC-GUC- -5'
5911 5' -67.1 NC_001806.1 + 20355 0.66 0.403303
Target:  5'- cGGCCCUuGGGCCGCcCGCcgucccguuGGUcccggcguccggcGgGCGGg -3'
miRNA:   3'- -CCGGGGuCCCGGCG-GCG---------CCA-------------CgCGUC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.