miRNA display CGI


Results 21 - 40 of 184 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5934 3' -65.3 NC_001806.1 + 109064 0.73 0.172289
Target:  5'- gCGGCCCCgauaaaCGCCCGcGGGGcCCCCGCgGAg -3'
miRNA:   3'- -GUCGGGG------GUGGGU-CCCU-GGGGUGgCU- -5'
5934 3' -65.3 NC_001806.1 + 5521 0.73 0.176429
Target:  5'- cCGGCCCCCcgccccCCCGGcGGGCCCaCcCCGAa -3'
miRNA:   3'- -GUCGGGGGu-----GGGUC-CCUGGG-GuGGCU- -5'
5934 3' -65.3 NC_001806.1 + 151249 0.73 0.176429
Target:  5'- uCAGCCCCgC-CCCccGGGCCCaCGCCGGg -3'
miRNA:   3'- -GUCGGGG-GuGGGucCCUGGG-GUGGCU- -5'
5934 3' -65.3 NC_001806.1 + 23444 0.73 0.180658
Target:  5'- -cGCCCCCGCCCAGcccgcGGcGCCCCggGCCGc -3'
miRNA:   3'- guCGGGGGUGGGUC-----CC-UGGGG--UGGCu -5'
5934 3' -65.3 NC_001806.1 + 115218 0.73 0.180658
Target:  5'- cCGGCCCugcaaCC-CCCGGGGACgCgCCGCCGGg -3'
miRNA:   3'- -GUCGGG-----GGuGGGUCCCUG-G-GGUGGCU- -5'
5934 3' -65.3 NC_001806.1 + 65461 0.73 0.184976
Target:  5'- gCGGCCCCCGgguCCUGGGGGCgCCCGCg-- -3'
miRNA:   3'- -GUCGGGGGU---GGGUCCCUG-GGGUGgcu -5'
5934 3' -65.3 NC_001806.1 + 150173 0.73 0.198479
Target:  5'- cCGGCCCCCgAUuuGGGGGCCCaacCCGGu -3'
miRNA:   3'- -GUCGGGGG-UGggUCCCUGGGgu-GGCU- -5'
5934 3' -65.3 NC_001806.1 + 28527 0.73 0.198479
Target:  5'- gGGCCCggggUCGCCguGGGACCCC-CUGAc -3'
miRNA:   3'- gUCGGG----GGUGGguCCCUGGGGuGGCU- -5'
5934 3' -65.3 NC_001806.1 + 96551 0.73 0.198479
Target:  5'- -cGCCCCC-CCaacgGGGGACCCgaaACCGAa -3'
miRNA:   3'- guCGGGGGuGGg---UCCCUGGGg--UGGCU- -5'
5934 3' -65.3 NC_001806.1 + 121546 0.73 0.200344
Target:  5'- uGGCCaggaucaccaaCCACCCGGGGggcugcgaguccugcGCCCCGCCGc -3'
miRNA:   3'- gUCGGg----------GGUGGGUCCC---------------UGGGGUGGCu -5'
5934 3' -65.3 NC_001806.1 + 77443 0.72 0.203168
Target:  5'- -cGCCCgCGCCCGGGcGuccGCCCCACCc- -3'
miRNA:   3'- guCGGGgGUGGGUCC-C---UGGGGUGGcu -5'
5934 3' -65.3 NC_001806.1 + 96383 0.72 0.207953
Target:  5'- -cGCCCCCGCgCGGGGGCgCCGgUGGu -3'
miRNA:   3'- guCGGGGGUGgGUCCCUGgGGUgGCU- -5'
5934 3' -65.3 NC_001806.1 + 57301 0.72 0.207953
Target:  5'- --aCCCCCGCgCCAGGGcCCCCACg-- -3'
miRNA:   3'- gucGGGGGUG-GGUCCCuGGGGUGgcu -5'
5934 3' -65.3 NC_001806.1 + 19346 0.72 0.207953
Target:  5'- -cGCCCCCcaaGCCUccgGGGGGCCCuacggcCACCGAu -3'
miRNA:   3'- guCGGGGG---UGGG---UCCCUGGG------GUGGCU- -5'
5934 3' -65.3 NC_001806.1 + 144823 0.72 0.207953
Target:  5'- gGGCCCCCgACCgCGGcgguccGGGCCCCGuCCGGa -3'
miRNA:   3'- gUCGGGGG-UGG-GUC------CCUGGGGU-GGCU- -5'
5934 3' -65.3 NC_001806.1 + 72540 0.72 0.209894
Target:  5'- gGGCCCCCgggaggggguaggggGCCCGGGGccACaCCCGCCc- -3'
miRNA:   3'- gUCGGGGG---------------UGGGUCCC--UG-GGGUGGcu -5'
5934 3' -65.3 NC_001806.1 + 26686 0.72 0.214815
Target:  5'- cCGGCCCCCaccgcccggcguggGCCCGGGGGgcggggcugaccccUCCCACCc- -3'
miRNA:   3'- -GUCGGGGG--------------UGGGUCCCU--------------GGGGUGGcu -5'
5934 3' -65.3 NC_001806.1 + 120866 0.72 0.21631
Target:  5'- gCGGCCCCUGgcgccgccugguccCCCGGGGACCUUGCCc- -3'
miRNA:   3'- -GUCGGGGGU--------------GGGUCCCUGGGGUGGcu -5'
5934 3' -65.3 NC_001806.1 + 17860 0.72 0.217814
Target:  5'- gCGGCCCCCAaccaccCCCuGGaGACCCUgcucaGCCGGu -3'
miRNA:   3'- -GUCGGGGGU------GGGuCC-CUGGGG-----UGGCU- -5'
5934 3' -65.3 NC_001806.1 + 32956 0.72 0.222893
Target:  5'- gGGCCCCgGgCCGGGG-CCCCuuggguccGCCGGg -3'
miRNA:   3'- gUCGGGGgUgGGUCCCuGGGG--------UGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.