miRNA display CGI


Results 1 - 20 of 184 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5934 3' -65.3 NC_001806.1 + 151249 0.73 0.176429
Target:  5'- uCAGCCCCgC-CCCccGGGCCCaCGCCGGg -3'
miRNA:   3'- -GUCGGGG-GuGGGucCCUGGG-GUGGCU- -5'
5934 3' -65.3 NC_001806.1 + 150173 0.73 0.198479
Target:  5'- cCGGCCCCCgAUuuGGGGGCCCaacCCGGu -3'
miRNA:   3'- -GUCGGGGG-UGggUCCCUGGGgu-GGCU- -5'
5934 3' -65.3 NC_001806.1 + 150113 0.7 0.273241
Target:  5'- gCGGCCCCgucCCCGGGGACCaacCCGGc -3'
miRNA:   3'- -GUCGGGGgu-GGGUCCCUGGgguGGCU- -5'
5934 3' -65.3 NC_001806.1 + 149783 0.7 0.279366
Target:  5'- cCGGCCCCuCACCUcgcgcuggGGGcGGCCCUcagGCCGGc -3'
miRNA:   3'- -GUCGGGG-GUGGG--------UCC-CUGGGG---UGGCU- -5'
5934 3' -65.3 NC_001806.1 + 148784 0.68 0.368975
Target:  5'- -cGCCCCCGCaacugCCGGGGucuuCCUCGCgGGg -3'
miRNA:   3'- guCGGGGGUG-----GGUCCCu---GGGGUGgCU- -5'
5934 3' -65.3 NC_001806.1 + 147149 0.68 0.361424
Target:  5'- -uGUCuCCCuCCCAGGGcaccgacgGCCCCGCCcGAg -3'
miRNA:   3'- guCGG-GGGuGGGUCCC--------UGGGGUGG-CU- -5'
5934 3' -65.3 NC_001806.1 + 146568 0.66 0.52168
Target:  5'- gCGGCCagagaCCACCCAGcgcccGACCCCcCCc- -3'
miRNA:   3'- -GUCGGg----GGUGGGUCc----CUGGGGuGGcu -5'
5934 3' -65.3 NC_001806.1 + 145001 0.79 0.065865
Target:  5'- gGGCCCCgGCCCGGGG-CCCCACa-- -3'
miRNA:   3'- gUCGGGGgUGGGUCCCuGGGGUGgcu -5'
5934 3' -65.3 NC_001806.1 + 144957 0.78 0.084714
Target:  5'- cCGGCCCCCguggcggcccgGCCCGGGG-CCCCGgCGGa -3'
miRNA:   3'- -GUCGGGGG-----------UGGGUCCCuGGGGUgGCU- -5'
5934 3' -65.3 NC_001806.1 + 144823 0.72 0.207953
Target:  5'- gGGCCCCCgACCgCGGcgguccGGGCCCCGuCCGGa -3'
miRNA:   3'- gUCGGGGG-UGG-GUC------CCUGGGGU-GGCU- -5'
5934 3' -65.3 NC_001806.1 + 144319 0.67 0.449313
Target:  5'- --cCCCCCGCCCGuguGGGuauccggccccccGCCCCgcGCCGGu -3'
miRNA:   3'- gucGGGGGUGGGU---CCC-------------UGGGG--UGGCU- -5'
5934 3' -65.3 NC_001806.1 + 143968 0.71 0.255512
Target:  5'- -cGCCCCUGCCCcGGcGACCCCcgGCCc- -3'
miRNA:   3'- guCGGGGGUGGGuCC-CUGGGG--UGGcu -5'
5934 3' -65.3 NC_001806.1 + 143663 0.69 0.353982
Target:  5'- -cGCCgcuaaaccccauCCCGCCCccGGGACCCCACa-- -3'
miRNA:   3'- guCGG------------GGGUGGGu-CCCUGGGGUGgcu -5'
5934 3' -65.3 NC_001806.1 + 143604 0.71 0.269618
Target:  5'- cCGGuCCCCCGuucCCCGGGGgccguuaucuccagcGCCCCGuCCGGc -3'
miRNA:   3'- -GUC-GGGGGU---GGGUCCC---------------UGGGGU-GGCU- -5'
5934 3' -65.3 NC_001806.1 + 139728 0.71 0.233354
Target:  5'- aUAGCCUaugCCACgCCAGGG-CCUCGCUGAc -3'
miRNA:   3'- -GUCGGG---GGUG-GGUCCCuGGGGUGGCU- -5'
5934 3' -65.3 NC_001806.1 + 139655 0.68 0.376632
Target:  5'- aCAGUuccaccgaaCCCgGCCCGGGGGacucacuaCCCACCGc -3'
miRNA:   3'- -GUCG---------GGGgUGGGUCCCUg-------GGGUGGCu -5'
5934 3' -65.3 NC_001806.1 + 138672 0.7 0.304297
Target:  5'- gCAGCgCCCgggccuggaugcgACCCAGaGGACCCuCGCCu- -3'
miRNA:   3'- -GUCGgGGG-------------UGGGUC-CCUGGG-GUGGcu -5'
5934 3' -65.3 NC_001806.1 + 137679 0.74 0.168236
Target:  5'- uGGCCCcggCCACCCAcGGGGCgCUGCCGGc -3'
miRNA:   3'- gUCGGG---GGUGGGU-CCCUGgGGUGGCU- -5'
5934 3' -65.3 NC_001806.1 + 137037 0.69 0.311631
Target:  5'- cCGGCCCgCCgcaccuucagcaACCCGGGGACCgaCCAgCCGu -3'
miRNA:   3'- -GUCGGG-GG------------UGGGUCCCUGG--GGU-GGCu -5'
5934 3' -65.3 NC_001806.1 + 135255 0.69 0.325308
Target:  5'- -cGCgCCUACCCgGGGGGCCCgaagCACUGAc -3'
miRNA:   3'- guCGgGGGUGGG-UCCCUGGG----GUGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.