miRNA display CGI


Results 21 - 40 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5937 3' -60.3 NC_001806.1 + 77934 0.66 0.686664
Target:  5'- cUGGGcccaGCUGGAaugGGGGGGugACg-- -3'
miRNA:   3'- aGCCC----CGGCCUaa-CCCCCCugUGauu -5'
5937 3' -60.3 NC_001806.1 + 77136 0.71 0.426725
Target:  5'- cCGGGGCCguGGAggagcucGGGGGGCGCg-- -3'
miRNA:   3'- aGCCCCGG--CCUaac----CCCCCUGUGauu -5'
5937 3' -60.3 NC_001806.1 + 71079 0.67 0.666788
Target:  5'- -aGGGGCC----UGGGGGGACuACa-- -3'
miRNA:   3'- agCCCCGGccuaACCCCCCUG-UGauu -5'
5937 3' -60.3 NC_001806.1 + 66227 0.67 0.646805
Target:  5'- gUUGGGGgCGGAgcguugugUGGGcGGGGCguuuGCUAc -3'
miRNA:   3'- -AGCCCCgGCCUa-------ACCC-CCCUG----UGAUu -5'
5937 3' -60.3 NC_001806.1 + 64662 0.68 0.567009
Target:  5'- -gGGGGCUGccGAauguccugGGGGGGACACg-- -3'
miRNA:   3'- agCCCCGGC--CUaa------CCCCCCUGUGauu -5'
5937 3' -60.3 NC_001806.1 + 55588 0.74 0.295481
Target:  5'- gUCGGGGgUGGAcgUGGGGGGGCu---- -3'
miRNA:   3'- -AGCCCCgGCCUa-ACCCCCCUGugauu -5'
5937 3' -60.3 NC_001806.1 + 55375 0.77 0.170757
Target:  5'- gUCGGGaGCCGGAgcgauugGGGGGGACGg--- -3'
miRNA:   3'- -AGCCC-CGGCCUaa-----CCCCCCUGUgauu -5'
5937 3' -60.3 NC_001806.1 + 55075 0.66 0.686664
Target:  5'- gUGGGGCUGGAggGucagagacGGGGGGCGg--- -3'
miRNA:   3'- aGCCCCGGCCUaaC--------CCCCCUGUgauu -5'
5937 3' -60.3 NC_001806.1 + 54297 0.67 0.616765
Target:  5'- -gGuGGGCgGGAUagaGGGGGGACcaaACUAu -3'
miRNA:   3'- agC-CCCGgCCUAa--CCCCCCUG---UGAUu -5'
5937 3' -60.3 NC_001806.1 + 44733 0.66 0.725829
Target:  5'- cCGGccccGGuuGGAg-GGGGGGGCGCc-- -3'
miRNA:   3'- aGCC----CCggCCUaaCCCCCCUGUGauu -5'
5937 3' -60.3 NC_001806.1 + 42321 0.68 0.586824
Target:  5'- gUCGGGGCgGGGggcgUGGGGaaucgcguaGGugGCg-- -3'
miRNA:   3'- -AGCCCCGgCCUa---ACCCC---------CCugUGauu -5'
5937 3' -60.3 NC_001806.1 + 38811 0.7 0.480624
Target:  5'- gCGGGGacCCGGGcgGGGGuGGAUACg-- -3'
miRNA:   3'- aGCCCC--GGCCUaaCCCC-CCUGUGauu -5'
5937 3' -60.3 NC_001806.1 + 37786 0.73 0.309155
Target:  5'- cCGGGGCCGGGgcgcGGGGGucCGCg-- -3'
miRNA:   3'- aGCCCCGGCCUaa--CCCCCcuGUGauu -5'
5937 3' -60.3 NC_001806.1 + 36688 0.69 0.54444
Target:  5'- cCGGGGCCcguaagaacagguuGGugaGGGGGGuCGCUGu -3'
miRNA:   3'- aGCCCCGG--------------CCuaaCCCCCCuGUGAUu -5'
5937 3' -60.3 NC_001806.1 + 34784 0.7 0.489931
Target:  5'- uUCGGGGggGGGggGGGGGGGCGg--- -3'
miRNA:   3'- -AGCCCCggCCUaaCCCCCCUGUgauu -5'
5937 3' -60.3 NC_001806.1 + 34369 0.68 0.586824
Target:  5'- cCGGGGCUGGGUaucccgaggUGGGuGGGugGg--- -3'
miRNA:   3'- aGCCCCGGCCUA---------ACCC-CCCugUgauu -5'
5937 3' -60.3 NC_001806.1 + 34289 0.68 0.561096
Target:  5'- -gGGGGCgGGAUgggguuuagcggcgGGGGGcGGCGCg-- -3'
miRNA:   3'- agCCCCGgCCUAa-------------CCCCC-CUGUGauu -5'
5937 3' -60.3 NC_001806.1 + 33629 0.7 0.472322
Target:  5'- -gGGGGCCGGAUacccacacgggcgggGGGGGGGuguCGCg-- -3'
miRNA:   3'- agCCCCGGCCUAa--------------CCCCCCU---GUGauu -5'
5937 3' -60.3 NC_001806.1 + 32025 0.68 0.595785
Target:  5'- gUGGGGCggaggggUGGGggGGGGGGAgACa-- -3'
miRNA:   3'- aGCCCCG-------GCCUaaCCCCCCUgUGauu -5'
5937 3' -60.3 NC_001806.1 + 30797 0.67 0.626777
Target:  5'- gCGGGGCCGucGGUgcccUGGGaGGGAgACa-- -3'
miRNA:   3'- aGCCCCGGC--CUA----ACCC-CCCUgUGauu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.