miRNA display CGI


Results 21 - 40 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5944 5' -57.4 NC_001806.1 + 72869 0.69 0.709867
Target:  5'- --gGAGAUGGGCgUCGUCCCggUUGGUc -3'
miRNA:   3'- cugCUUUGCCUGgAGCGGGGa-GACCG- -5'
5944 5' -57.4 NC_001806.1 + 123217 0.69 0.710851
Target:  5'- uGGCGGAAUGGACCgagaugccgcccacgCGgCCCUgcgccgacgcCUGGCc -3'
miRNA:   3'- -CUGCUUUGCCUGGa--------------GCgGGGA----------GACCG- -5'
5944 5' -57.4 NC_001806.1 + 150713 0.69 0.71967
Target:  5'- -cCGAGGCGG-CC-CGCCCUgugagggcgggCUGGCu -3'
miRNA:   3'- cuGCUUUGCCuGGaGCGGGGa----------GACCG- -5'
5944 5' -57.4 NC_001806.1 + 22665 0.69 0.71967
Target:  5'- cGGCGccGCGGGgauCCUCGCCgCC-CUGGg -3'
miRNA:   3'- -CUGCuuUGCCU---GGAGCGG-GGaGACCg -5'
5944 5' -57.4 NC_001806.1 + 57757 0.69 0.71967
Target:  5'- cGGCGGGACGGGCCgcCGUCCCgUCcgccGCa -3'
miRNA:   3'- -CUGCUUUGCCUGGa-GCGGGG-AGac--CG- -5'
5944 5' -57.4 NC_001806.1 + 75280 0.68 0.739048
Target:  5'- aGCGAccCGG-CCUC-CCCC-CUGGCc -3'
miRNA:   3'- cUGCUuuGCCuGGAGcGGGGaGACCG- -5'
5944 5' -57.4 NC_001806.1 + 87254 0.68 0.739048
Target:  5'- aGugGGGucaaGGAcCCUgGCCCC-CUGGUa -3'
miRNA:   3'- -CugCUUug--CCU-GGAgCGGGGaGACCG- -5'
5944 5' -57.4 NC_001806.1 + 89792 0.68 0.739048
Target:  5'- gGGCuGggGCGGACCggcaCGCCCC-CaGGa -3'
miRNA:   3'- -CUG-CuuUGCCUGGa---GCGGGGaGaCCg -5'
5944 5' -57.4 NC_001806.1 + 79391 0.68 0.748606
Target:  5'- uGACGAcuccGGCGGcCCcgCGCCCCUCcuuGCc -3'
miRNA:   3'- -CUGCU----UUGCCuGGa-GCGGGGAGac-CG- -5'
5944 5' -57.4 NC_001806.1 + 50676 0.68 0.748606
Target:  5'- gGACGAcGCGGcgGCCacgCGCgCCauUCUGGCc -3'
miRNA:   3'- -CUGCUuUGCC--UGGa--GCGgGG--AGACCG- -5'
5944 5' -57.4 NC_001806.1 + 74062 0.68 0.748606
Target:  5'- gGAgGAGguGCGGACCcagGCCCgUCgGGCg -3'
miRNA:   3'- -CUgCUU--UGCCUGGag-CGGGgAGaCCG- -5'
5944 5' -57.4 NC_001806.1 + 2812 0.68 0.748606
Target:  5'- gGGCgGggGCGGGCuCggGCCCCgggGGCg -3'
miRNA:   3'- -CUG-CuuUGCCUG-GagCGGGGagaCCG- -5'
5944 5' -57.4 NC_001806.1 + 77269 0.68 0.748606
Target:  5'- cGACGcgguGGCcggGGACCUgGCCCCaugGGCg -3'
miRNA:   3'- -CUGCu---UUG---CCUGGAgCGGGGagaCCG- -5'
5944 5' -57.4 NC_001806.1 + 105980 0.68 0.758066
Target:  5'- gGACGAAcuaaaccugacuACGGcAUCUCuGCCCCUucuucgCUGGUa -3'
miRNA:   3'- -CUGCUU------------UGCC-UGGAG-CGGGGA------GACCG- -5'
5944 5' -57.4 NC_001806.1 + 29857 0.68 0.767416
Target:  5'- cGCGGcuCGGACagCGCCCCcCUcGGCg -3'
miRNA:   3'- cUGCUuuGCCUGgaGCGGGGaGA-CCG- -5'
5944 5' -57.4 NC_001806.1 + 24306 0.68 0.776651
Target:  5'- cGGCGgcGCgGGACCUgCGCCgCacggugCUGGCc -3'
miRNA:   3'- -CUGCuuUG-CCUGGA-GCGGgGa-----GACCG- -5'
5944 5' -57.4 NC_001806.1 + 150891 0.68 0.785759
Target:  5'- -cCGGGcACGGGCCUCggGCCCCa--GGCa -3'
miRNA:   3'- cuGCUU-UGCCUGGAG--CGGGGagaCCG- -5'
5944 5' -57.4 NC_001806.1 + 24900 0.68 0.785759
Target:  5'- gGGCgGAGGCGGGCUUggccaCGCCCCcgC-GGCg -3'
miRNA:   3'- -CUG-CUUUGCCUGGA-----GCGGGGa-GaCCG- -5'
5944 5' -57.4 NC_001806.1 + 22062 0.67 0.803567
Target:  5'- cGGCGc--CGGGCCccCGCCCCcggGGCg -3'
miRNA:   3'- -CUGCuuuGCCUGGa-GCGGGGagaCCG- -5'
5944 5' -57.4 NC_001806.1 + 114182 0.67 0.807058
Target:  5'- aGCGAccccguGACGGACCccgCGCaCCCccugcacccggccaaUCUGGUg -3'
miRNA:   3'- cUGCU------UUGCCUGGa--GCG-GGG---------------AGACCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.