miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5944 5' -57.4 NC_001806.1 + 150891 0.68 0.785759
Target:  5'- -cCGGGcACGGGCCUCggGCCCCa--GGCa -3'
miRNA:   3'- cuGCUU-UGCCUGGAG--CGGGGagaCCG- -5'
5944 5' -57.4 NC_001806.1 + 150713 0.69 0.71967
Target:  5'- -cCGAGGCGG-CC-CGCCCUgugagggcgggCUGGCu -3'
miRNA:   3'- cuGCUUUGCCuGGaGCGGGGa----------GACCG- -5'
5944 5' -57.4 NC_001806.1 + 150652 0.67 0.820772
Target:  5'- cGGCGGAcgcugguugGcCGGGCCcCGCCgCgCUGGCg -3'
miRNA:   3'- -CUGCUU---------U-GCCUGGaGCGGgGaGACCG- -5'
5944 5' -57.4 NC_001806.1 + 147658 0.7 0.650007
Target:  5'- cGCGggGCGGgcgGCCggcucCGCCCCgggGGCc -3'
miRNA:   3'- cUGCuuUGCC---UGGa----GCGGGGagaCCG- -5'
5944 5' -57.4 NC_001806.1 + 137569 0.7 0.650007
Target:  5'- cACGAAGCGcGcCCUgGCCgCCUCcgggGGCg -3'
miRNA:   3'- cUGCUUUGC-CuGGAgCGG-GGAGa---CCG- -5'
5944 5' -57.4 NC_001806.1 + 135774 0.72 0.520619
Target:  5'- uGGCGAAgcuGCGGcGCC-CGCCCCccCUGGUc -3'
miRNA:   3'- -CUGCUU---UGCC-UGGaGCGGGGa-GACCG- -5'
5944 5' -57.4 NC_001806.1 + 135299 0.7 0.650007
Target:  5'- cGACGAAuGCGGcgaUCGCCCCgCUGGa -3'
miRNA:   3'- -CUGCUU-UGCCuggAGCGGGGaGACCg -5'
5944 5' -57.4 NC_001806.1 + 132863 0.66 0.842934
Target:  5'- gGACGgcGCgguuuugcuuccccGGACUUCGCgCCCagcucCUGGCg -3'
miRNA:   3'- -CUGCuuUG--------------CCUGGAGCG-GGGa----GACCG- -5'
5944 5' -57.4 NC_001806.1 + 125700 0.76 0.323257
Target:  5'- cGCGGGuugcugcGCGGcguCCgCGCCCCUCUGGCc -3'
miRNA:   3'- cUGCUU-------UGCCu--GGaGCGGGGAGACCG- -5'
5944 5' -57.4 NC_001806.1 + 125492 0.66 0.88031
Target:  5'- aGACGAAAagcccCGGGCCgcgUCGCCggcacuuucugacgCCUCagGGCc -3'
miRNA:   3'- -CUGCUUU-----GCCUGG---AGCGG--------------GGAGa-CCG- -5'
5944 5' -57.4 NC_001806.1 + 123217 0.69 0.710851
Target:  5'- uGGCGGAAUGGACCgagaugccgcccacgCGgCCCUgcgccgacgcCUGGCc -3'
miRNA:   3'- -CUGCUUUGCCUGGa--------------GCgGGGA----------GACCG- -5'
5944 5' -57.4 NC_001806.1 + 120847 0.66 0.875385
Target:  5'- uGGCGcAGCugGGACCccggCGgCCC-CUGGCg -3'
miRNA:   3'- -CUGCuUUG--CCUGGa---GCgGGGaGACCG- -5'
5944 5' -57.4 NC_001806.1 + 114182 0.67 0.807058
Target:  5'- aGCGAccccguGACGGACCccgCGCaCCCccugcacccggccaaUCUGGUg -3'
miRNA:   3'- cUGCU------UUGCCUGGa--GCG-GGG---------------AGACCG- -5'
5944 5' -57.4 NC_001806.1 + 112805 0.67 0.829129
Target:  5'- gGGCGccAUGGACCUgacguucguccUGCCCCUg-GGCc -3'
miRNA:   3'- -CUGCuuUGCCUGGA-----------GCGGGGAgaCCG- -5'
5944 5' -57.4 NC_001806.1 + 109240 0.72 0.549882
Target:  5'- gGGCGggGCGGAauCCUgGgCCCCg--GGCa -3'
miRNA:   3'- -CUGCuuUGCCU--GGAgC-GGGGagaCCG- -5'
5944 5' -57.4 NC_001806.1 + 106876 0.74 0.436175
Target:  5'- gGGCGccGAGCaGGGCCcgCGCCCCccucucuUCUGGCg -3'
miRNA:   3'- -CUGC--UUUG-CCUGGa-GCGGGG-------AGACCG- -5'
5944 5' -57.4 NC_001806.1 + 105980 0.68 0.758066
Target:  5'- gGACGAAcuaaaccugacuACGGcAUCUCuGCCCCUucuucgCUGGUa -3'
miRNA:   3'- -CUGCUU------------UGCC-UGGAG-CGGGGA------GACCG- -5'
5944 5' -57.4 NC_001806.1 + 100923 0.71 0.609711
Target:  5'- uGCGAu-CGGggugcGCCUCGCCCCcCaGGCg -3'
miRNA:   3'- cUGCUuuGCC-----UGGAGCGGGGaGaCCG- -5'
5944 5' -57.4 NC_001806.1 + 95306 0.66 0.845315
Target:  5'- gGGCGcgGCGGACg-CGCCCaag-GGCg -3'
miRNA:   3'- -CUGCuuUGCCUGgaGCGGGgagaCCG- -5'
5944 5' -57.4 NC_001806.1 + 92923 0.66 0.875385
Target:  5'- gGGCGggGCGGGCCUgGaggCCgg-GGCc -3'
miRNA:   3'- -CUGCuuUGCCUGGAgCgg-GGagaCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.