miRNA display CGI


Results 21 - 40 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5945 5' -57.2 NC_001806.1 + 2930 0.7 0.657718
Target:  5'- -gCCGCCGCcuccGGGCGGcCGGGCcGGGc -3'
miRNA:   3'- agGGCGGCGau--UCCGCU-GCUCGuUCU- -5'
5945 5' -57.2 NC_001806.1 + 23738 0.7 0.657718
Target:  5'- cCCCGCCGCccAGGCcGCGuGCGGc- -3'
miRNA:   3'- aGGGCGGCGauUCCGcUGCuCGUUcu -5'
5945 5' -57.2 NC_001806.1 + 73984 0.7 0.657718
Target:  5'- gCCCGCCccgGCcGGGGCGGCcccGCAGGGg -3'
miRNA:   3'- aGGGCGG---CGaUUCCGCUGcu-CGUUCU- -5'
5945 5' -57.2 NC_001806.1 + 95060 0.7 0.657718
Target:  5'- -aCUGgCGCUGuucGGGCGGCGGGC-GGAg -3'
miRNA:   3'- agGGCgGCGAU---UCCGCUGCUCGuUCU- -5'
5945 5' -57.2 NC_001806.1 + 20368 0.7 0.667846
Target:  5'- gCCCGCCGUcccguUGGucccGGCGuccgGCGGGCGGGAc -3'
miRNA:   3'- aGGGCGGCG-----AUU----CCGC----UGCUCGUUCU- -5'
5945 5' -57.2 NC_001806.1 + 45500 0.69 0.677944
Target:  5'- aCCCGCC-CUGugugGGGUGAgGGGUggGGg -3'
miRNA:   3'- aGGGCGGcGAU----UCCGCUgCUCGuuCU- -5'
5945 5' -57.2 NC_001806.1 + 106787 0.69 0.677944
Target:  5'- cUCCGCCGCguGGGCGGCuacccggaggaGGGCAcGAa -3'
miRNA:   3'- aGGGCGGCGauUCCGCUG-----------CUCGUuCU- -5'
5945 5' -57.2 NC_001806.1 + 19630 0.69 0.677944
Target:  5'- uUCCCcCCGCc----CGACGAGCAGGAa -3'
miRNA:   3'- -AGGGcGGCGauuccGCUGCUCGUUCU- -5'
5945 5' -57.2 NC_001806.1 + 30489 0.69 0.683987
Target:  5'- cUCCGCCGCcucugucgagcagGAGGCGGCGGuGCGuccgaGGAa -3'
miRNA:   3'- aGGGCGGCGa------------UUCCGCUGCU-CGU-----UCU- -5'
5945 5' -57.2 NC_001806.1 + 90998 0.69 0.698023
Target:  5'- cCCCGCggggcgggCGCgacGGCGGCG-GCAAGGg -3'
miRNA:   3'- aGGGCG--------GCGauuCCGCUGCuCGUUCU- -5'
5945 5' -57.2 NC_001806.1 + 2501 0.69 0.698023
Target:  5'- -gCCGCCGCacgcggccuGGGCGGCGggGGCGGGc -3'
miRNA:   3'- agGGCGGCGau-------UCCGCUGC--UCGUUCu -5'
5945 5' -57.2 NC_001806.1 + 5916 0.69 0.698023
Target:  5'- cCuuGCCGCccccccauuGGcCGGCGGGCGGGAc -3'
miRNA:   3'- aGggCGGCGauu------CC-GCUGCUCGUUCU- -5'
5945 5' -57.2 NC_001806.1 + 150704 0.69 0.698023
Target:  5'- gUCCCGCCcCcGAGGCGGCccgcccugugaGGGCGGGc -3'
miRNA:   3'- -AGGGCGGcGaUUCCGCUG-----------CUCGUUCu -5'
5945 5' -57.2 NC_001806.1 + 88965 0.69 0.707984
Target:  5'- gUCCaCGCCGCcccacAGGCG-CGAGCGc-- -3'
miRNA:   3'- -AGG-GCGGCGau---UCCGCuGCUCGUucu -5'
5945 5' -57.2 NC_001806.1 + 147455 0.68 0.733566
Target:  5'- -aCCGCCGCcuccugcucgacaGAGGCGGCggagggGAGCGGGGc -3'
miRNA:   3'- agGGCGGCGa------------UUCCGCUG------CUCGUUCU- -5'
5945 5' -57.2 NC_001806.1 + 49932 0.68 0.747107
Target:  5'- cCCCGCC-C--AGGCGAUGAGCu--- -3'
miRNA:   3'- aGGGCGGcGauUCCGCUGCUCGuucu -5'
5945 5' -57.2 NC_001806.1 + 137579 0.68 0.756662
Target:  5'- gCCCugGCCGCcuccgGGGGCGAgGAGUugcGGAa -3'
miRNA:   3'- aGGG--CGGCGa----UUCCGCUgCUCGu--UCU- -5'
5945 5' -57.2 NC_001806.1 + 36203 0.68 0.756662
Target:  5'- cUCUGCCGCgcGGGCGGCcaugccgcugGAGCugauGGAg -3'
miRNA:   3'- aGGGCGGCGauUCCGCUG----------CUCGu---UCU- -5'
5945 5' -57.2 NC_001806.1 + 56708 0.68 0.765169
Target:  5'- cCCCggGUCGCUcuggguccuccggGGGGCGGCGGGaaaGAGAc -3'
miRNA:   3'- aGGG--CGGCGA-------------UUCCGCUGCUCg--UUCU- -5'
5945 5' -57.2 NC_001806.1 + 142012 0.68 0.766108
Target:  5'- aCCaGCCuCUAGGGCGGCGAGgAGc- -3'
miRNA:   3'- aGGgCGGcGAUUCCGCUGCUCgUUcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.