Results 1 - 20 of 72 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5945 | 5' | -57.2 | NC_001806.1 | + | 151436 | 0.67 | 0.811401 |
Target: 5'- gCCCaCCgGCggGGGGCGGCG-GCGGGGc -3' miRNA: 3'- aGGGcGG-CGa-UUCCGCUGCuCGUUCU- -5' |
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5945 | 5' | -57.2 | NC_001806.1 | + | 151176 | 0.66 | 0.860392 |
Target: 5'- cUCCGCggugaCGCgcAGGCGGaGGGCGAGGc -3' miRNA: 3'- aGGGCG-----GCGauUCCGCUgCUCGUUCU- -5' |
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5945 | 5' | -57.2 | NC_001806.1 | + | 150704 | 0.69 | 0.698023 |
Target: 5'- gUCCCGCCcCcGAGGCGGCccgcccugugaGGGCGGGc -3' miRNA: 3'- -AGGGCGGcGaUUCCGCUG-----------CUCGUUCu -5' |
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5945 | 5' | -57.2 | NC_001806.1 | + | 150674 | 0.66 | 0.875167 |
Target: 5'- cCCCGCCGCgcuGGCGGCc-GCc--- -3' miRNA: 3'- aGGGCGGCGauuCCGCUGcuCGuucu -5' |
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5945 | 5' | -57.2 | NC_001806.1 | + | 147500 | 0.66 | 0.875167 |
Target: 5'- --gCGCCGgagGGGGCGGCGccGCGGGAg -3' miRNA: 3'- aggGCGGCga-UUCCGCUGCu-CGUUCU- -5' |
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5945 | 5' | -57.2 | NC_001806.1 | + | 147455 | 0.68 | 0.733566 |
Target: 5'- -aCCGCCGCcuccugcucgacaGAGGCGGCggagggGAGCGGGGc -3' miRNA: 3'- agGGCGGCGa------------UUCCGCUG------CUCGUUCU- -5' |
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5945 | 5' | -57.2 | NC_001806.1 | + | 147174 | 0.66 | 0.852696 |
Target: 5'- cCCCGCC-CgagGAGGCGGaagcgGAGgAGGAc -3' miRNA: 3'- aGGGCGGcGa--UUCCGCUg----CUCgUUCU- -5' |
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5945 | 5' | -57.2 | NC_001806.1 | + | 142157 | 0.67 | 0.811401 |
Target: 5'- gUCCCGUCGCggggUGGGGUccGACGuGGCGAuGAu -3' miRNA: 3'- -AGGGCGGCG----AUUCCG--CUGC-UCGUU-CU- -5' |
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5945 | 5' | -57.2 | NC_001806.1 | + | 142012 | 0.68 | 0.766108 |
Target: 5'- aCCaGCCuCUAGGGCGGCGAGgAGc- -3' miRNA: 3'- aGGgCGGcGAUUCCGCUGCUCgUUcu -5' |
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5945 | 5' | -57.2 | NC_001806.1 | + | 137579 | 0.68 | 0.756662 |
Target: 5'- gCCCugGCCGCcuccgGGGGCGAgGAGUugcGGAa -3' miRNA: 3'- aGGG--CGGCGa----UUCCGCUgCUCGu--UCU- -5' |
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5945 | 5' | -57.2 | NC_001806.1 | + | 122873 | 0.66 | 0.858869 |
Target: 5'- -gCCGCCGCgccacggccgagAAGaGCGGCGAGUg--- -3' miRNA: 3'- agGGCGGCGa-----------UUC-CGCUGCUCGuucu -5' |
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5945 | 5' | -57.2 | NC_001806.1 | + | 111316 | 0.73 | 0.460419 |
Target: 5'- aCCCGUCGCguucuaacGGGgGugGGGCGGGGg -3' miRNA: 3'- aGGGCGGCGau------UCCgCugCUCGUUCU- -5' |
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5945 | 5' | -57.2 | NC_001806.1 | + | 106862 | 0.66 | 0.875167 |
Target: 5'- uUCUCGggggaCGC--GGGCGcCGAGCAGGGc -3' miRNA: 3'- -AGGGCg----GCGauUCCGCuGCUCGUUCU- -5' |
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5945 | 5' | -57.2 | NC_001806.1 | + | 106787 | 0.69 | 0.677944 |
Target: 5'- cUCCGCCGCguGGGCGGCuacccggaggaGGGCAcGAa -3' miRNA: 3'- aGGGCGGCGauUCCGCUG-----------CUCGUuCU- -5' |
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5945 | 5' | -57.2 | NC_001806.1 | + | 103810 | 0.76 | 0.342331 |
Target: 5'- -gCCGCCGCggcGGCGACGGGCucgcuGGGu -3' miRNA: 3'- agGGCGGCGauuCCGCUGCUCGu----UCU- -5' |
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5945 | 5' | -57.2 | NC_001806.1 | + | 103197 | 0.66 | 0.851133 |
Target: 5'- cUCCGCCGCcgucucccggggGAGGUuaaaGACGGGCGAc- -3' miRNA: 3'- aGGGCGGCGa-----------UUCCG----CUGCUCGUUcu -5' |
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5945 | 5' | -57.2 | NC_001806.1 | + | 100380 | 0.71 | 0.566596 |
Target: 5'- cUCCCGUCGCc-GGGCGGCGcgggGGCcGGGg -3' miRNA: 3'- -AGGGCGGCGauUCCGCUGC----UCGuUCU- -5' |
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5945 | 5' | -57.2 | NC_001806.1 | + | 96489 | 0.67 | 0.793707 |
Target: 5'- gUCgCgGCCGCgacccAGGCGGCGAaCGGGGg -3' miRNA: 3'- -AG-GgCGGCGau---UCCGCUGCUcGUUCU- -5' |
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5945 | 5' | -57.2 | NC_001806.1 | + | 96364 | 0.66 | 0.875167 |
Target: 5'- gUCCCGCCauGCgccAGGGCGccccCGcGCGGGGg -3' miRNA: 3'- -AGGGCGG--CGa--UUCCGCu---GCuCGUUCU- -5' |
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5945 | 5' | -57.2 | NC_001806.1 | + | 95060 | 0.7 | 0.657718 |
Target: 5'- -aCUGgCGCUGuucGGGCGGCGGGC-GGAg -3' miRNA: 3'- agGGCgGCGAU---UCCGCUGCUCGuUCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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