miRNA display CGI


Results 1 - 20 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5946 5' -62.7 NC_001806.1 + 150939 0.68 0.546
Target:  5'- cUCCGcCaCCCGG-CGCCGgaaccgagCCCGGUc -3'
miRNA:   3'- cAGGCaGcGGGCCaGUGGCa-------GGGCCG- -5'
5946 5' -62.7 NC_001806.1 + 150118 0.71 0.381175
Target:  5'- -cCCGUC-CCCGGggACCaaCCCGGCg -3'
miRNA:   3'- caGGCAGcGGGCCagUGGcaGGGCCG- -5'
5946 5' -62.7 NC_001806.1 + 148363 0.68 0.555421
Target:  5'- -aCCGUCGUCCaGGUCGucgucauccUCGUCCgUGGUg -3'
miRNA:   3'- caGGCAGCGGG-CCAGU---------GGCAGG-GCCG- -5'
5946 5' -62.7 NC_001806.1 + 147562 0.66 0.65129
Target:  5'- -gCCGcgCGCCaccGUCGCaCGcgCCCGGCa -3'
miRNA:   3'- caGGCa-GCGGgc-CAGUG-GCa-GGGCCG- -5'
5946 5' -62.7 NC_001806.1 + 144963 0.67 0.603122
Target:  5'- -cCCGUggcgGCCCGG-C-CCGgggcCCCGGCg -3'
miRNA:   3'- caGGCAg---CGGGCCaGuGGCa---GGGCCG- -5'
5946 5' -62.7 NC_001806.1 + 144840 0.68 0.546
Target:  5'- gGUCCGggcccCGUCCGGaC-CCGcUCgCCGGCa -3'
miRNA:   3'- -CAGGCa----GCGGGCCaGuGGC-AG-GGCCG- -5'
5946 5' -62.7 NC_001806.1 + 143536 0.66 0.65129
Target:  5'- -cCCGgcccgGCCCGG-C-CCGgCCCGGCc -3'
miRNA:   3'- caGGCag---CGGGCCaGuGGCaGGGCCG- -5'
5946 5' -62.7 NC_001806.1 + 141672 0.66 0.660911
Target:  5'- aGUCCGUgCGCCUggccgggguGGUgAUauggGUCCUGGCc -3'
miRNA:   3'- -CAGGCA-GCGGG---------CCAgUGg---CAGGGCCG- -5'
5946 5' -62.7 NC_001806.1 + 134830 0.68 0.536631
Target:  5'- -aCCG-CgGCUggCGGUCGCCGaCCUGGCg -3'
miRNA:   3'- caGGCaG-CGG--GCCAGUGGCaGGGCCG- -5'
5946 5' -62.7 NC_001806.1 + 132597 0.67 0.59352
Target:  5'- uUCCGgguugGCCCacguUCACCGUgCCGGCc -3'
miRNA:   3'- cAGGCag---CGGGcc--AGUGGCAgGGCCG- -5'
5946 5' -62.7 NC_001806.1 + 131566 0.67 0.574398
Target:  5'- -cCCGUCa-CCGGUuuccgcgaccCACCGggCCCGGCc -3'
miRNA:   3'- caGGCAGcgGGCCA----------GUGGCa-GGGCCG- -5'
5946 5' -62.7 NC_001806.1 + 129806 0.68 0.536631
Target:  5'- -aUCGUgGCCCGGUUcuGCCGUCaguuuaCGGa -3'
miRNA:   3'- caGGCAgCGGGCCAG--UGGCAGg-----GCCg -5'
5946 5' -62.7 NC_001806.1 + 126484 0.68 0.536631
Target:  5'- cUUCG-CGCCCGGgCG-CGUCcCCGGCc -3'
miRNA:   3'- cAGGCaGCGGGCCaGUgGCAG-GGCCG- -5'
5946 5' -62.7 NC_001806.1 + 125854 0.69 0.464061
Target:  5'- -cCCGgcCGCCgCGGaCGCCGUggcgcCCCGGCc -3'
miRNA:   3'- caGGCa-GCGG-GCCaGUGGCA-----GGGCCG- -5'
5946 5' -62.7 NC_001806.1 + 125717 0.66 0.680082
Target:  5'- cGUCCG-CGCCCcucuGGcCAUCGgUCCCcucuGGCc -3'
miRNA:   3'- -CAGGCaGCGGG----CCaGUGGC-AGGG----CCG- -5'
5946 5' -62.7 NC_001806.1 + 125584 0.66 0.680082
Target:  5'- -cCCG-CGaCCCGGaCGCCGaUCCCGa- -3'
miRNA:   3'- caGGCaGC-GGGCCaGUGGC-AGGGCcg -5'
5946 5' -62.7 NC_001806.1 + 121919 0.74 0.258764
Target:  5'- -aCCGUUGCCCGG--GCCGUugCCCGGg -3'
miRNA:   3'- caGGCAGCGGGCCagUGGCA--GGGCCg -5'
5946 5' -62.7 NC_001806.1 + 120731 0.66 0.680082
Target:  5'- cGUCCGggaaCGgCCGGUCucgcuagcggcGCCuuccCCCGGCc -3'
miRNA:   3'- -CAGGCa---GCgGGCCAG-----------UGGca--GGGCCG- -5'
5946 5' -62.7 NC_001806.1 + 120688 0.69 0.481752
Target:  5'- -cCCGUCGCgCGGgcCGCUGUCCUuaGGUu -3'
miRNA:   3'- caGGCAGCGgGCCa-GUGGCAGGG--CCG- -5'
5946 5' -62.7 NC_001806.1 + 107608 0.71 0.381175
Target:  5'- aUCCGagacCCCGGUCGaaGUCCUGGCc -3'
miRNA:   3'- cAGGCagc-GGGCCAGUggCAGGGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.