Results 1 - 20 of 65 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5949 | 5' | -63.1 | NC_001806.1 | + | 151283 | 0.7 | 0.399671 |
Target: 5'- gGGGCCGgggCCGgggggcggcggCGGUGGGCCGg -3' miRNA: 3'- gUCCGGCauaGGCag---------GCCGCCCGGCa -5' |
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5949 | 5' | -63.1 | NC_001806.1 | + | 150866 | 0.7 | 0.377426 |
Target: 5'- cCGGGCCGgcUCCG-CgGGCcaGGGCCc- -3' miRNA: 3'- -GUCCGGCauAGGCaGgCCG--CCCGGca -5' |
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5949 | 5' | -63.1 | NC_001806.1 | + | 147669 | 0.74 | 0.222261 |
Target: 5'- -cGGCCGgcUCCGccCCGG-GGGCCGg -3' miRNA: 3'- guCCGGCauAGGCa-GGCCgCCCGGCa -5' |
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5949 | 5' | -63.1 | NC_001806.1 | + | 146761 | 0.66 | 0.590746 |
Target: 5'- gAGGCUGUuccacUCCGaCgCGG-GGGCCGUc -3' miRNA: 3'- gUCCGGCAu----AGGCaG-GCCgCCCGGCA- -5' |
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5949 | 5' | -63.1 | NC_001806.1 | + | 146075 | 0.66 | 0.610113 |
Target: 5'- gAGGCCagGUCaGUCCgGGCGGGCa-- -3' miRNA: 3'- gUCCGGcaUAGgCAGG-CCGCCCGgca -5' |
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5949 | 5' | -63.1 | NC_001806.1 | + | 143622 | 0.73 | 0.24042 |
Target: 5'- gGGGCCGUuaucuccagcgccCCGUCCGGCGcGCCGc -3' miRNA: 3'- gUCCGGCAua-----------GGCAGGCCGCcCGGCa -5' |
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5949 | 5' | -63.1 | NC_001806.1 | + | 140885 | 0.67 | 0.533478 |
Target: 5'- aGGGCCc-GUCgGUacagGGCGGGCCGUc -3' miRNA: 3'- gUCCGGcaUAGgCAgg--CCGCCCGGCA- -5' |
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5949 | 5' | -63.1 | NC_001806.1 | + | 124497 | 0.75 | 0.197689 |
Target: 5'- -cGGUCGgacgCCGucucgcUCCGGCGGGCCGUc -3' miRNA: 3'- guCCGGCaua-GGC------AGGCCGCCCGGCA- -5' |
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5949 | 5' | -63.1 | NC_001806.1 | + | 113680 | 0.66 | 0.600419 |
Target: 5'- -uGGCCGUGUaCCGggacCUGGUGGcGCaCGUc -3' miRNA: 3'- guCCGGCAUA-GGCa---GGCCGCC-CG-GCA- -5' |
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5949 | 5' | -63.1 | NC_001806.1 | + | 105087 | 0.68 | 0.469383 |
Target: 5'- aCGGuGCgGUAUCUGcagggCGGCGGGUCGUg -3' miRNA: 3'- -GUC-CGgCAUAGGCag---GCCGCCCGGCA- -5' |
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5949 | 5' | -63.1 | NC_001806.1 | + | 102893 | 0.66 | 0.610113 |
Target: 5'- uGGuGUCGUAU-CGUagCGGCGGGUCGUu -3' miRNA: 3'- gUC-CGGCAUAgGCAg-GCCGCCCGGCA- -5' |
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5949 | 5' | -63.1 | NC_001806.1 | + | 101837 | 0.67 | 0.567654 |
Target: 5'- aGGGCgGUGaggcgcaccagcgCCGcCUGGCGGGCCc- -3' miRNA: 3'- gUCCGgCAUa------------GGCaGGCCGCCCGGca -5' |
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5949 | 5' | -63.1 | NC_001806.1 | + | 99910 | 0.67 | 0.524111 |
Target: 5'- uCAGcGCCGUgauggucucGUUgGUCCcgggagaauGGCGGGCCGc -3' miRNA: 3'- -GUC-CGGCA---------UAGgCAGG---------CCGCCCGGCa -5' |
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5949 | 5' | -63.1 | NC_001806.1 | + | 95050 | 0.66 | 0.590746 |
Target: 5'- -uGGCCGUggaacuggcgcuGUUCGggCGGCGGGCgGa -3' miRNA: 3'- guCCGGCA------------UAGGCagGCCGCCCGgCa -5' |
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5949 | 5' | -63.1 | NC_001806.1 | + | 94388 | 0.66 | 0.581101 |
Target: 5'- uCAGGCUGgauaCGUauGGCGGGaCCGUc -3' miRNA: 3'- -GUCCGGCauagGCAggCCGCCC-GGCA- -5' |
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5949 | 5' | -63.1 | NC_001806.1 | + | 89496 | 0.68 | 0.469383 |
Target: 5'- aGGGCCuUGUuuGUCUGGCGGauCCGg -3' miRNA: 3'- gUCCGGcAUAggCAGGCCGCCc-GGCa -5' |
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5949 | 5' | -63.1 | NC_001806.1 | + | 89266 | 0.7 | 0.39323 |
Target: 5'- -cGGCUGgcUCCGcgagggCCGGCGGGCg-- -3' miRNA: 3'- guCCGGCauAGGCa-----GGCCGCCCGgca -5' |
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5949 | 5' | -63.1 | NC_001806.1 | + | 87893 | 0.68 | 0.469383 |
Target: 5'- -cGGCCGUAcCCGUCCaGgGGGaCCu- -3' miRNA: 3'- guCCGGCAUaGGCAGGcCgCCC-GGca -5' |
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5949 | 5' | -63.1 | NC_001806.1 | + | 82004 | 0.73 | 0.260388 |
Target: 5'- aCAGGauCCGUcucGUCCGUCCGGCaucuucgGGGCCc- -3' miRNA: 3'- -GUCC--GGCA---UAGGCAGGCCG-------CCCGGca -5' |
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5949 | 5' | -63.1 | NC_001806.1 | + | 78810 | 0.67 | 0.524111 |
Target: 5'- --uGCCGUGU-CGUCCGacaucgagacGUGGGCCGUc -3' miRNA: 3'- gucCGGCAUAgGCAGGC----------CGCCCGGCA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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