miRNA display CGI


Results 21 - 40 of 150 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5956 3' -56.4 NC_001806.1 + 10727 0.74 0.458528
Target:  5'- gCGGGaCCGGAGC-GCgCAUGCACGCCGc -3'
miRNA:   3'- -GUCC-GGCUUUGcCG-GUACGUGUGGUc -5'
5956 3' -56.4 NC_001806.1 + 128036 0.74 0.46786
Target:  5'- cCAGGCCGAcgaugcccguGGCGGCCAcgGCcC-CCAGg -3'
miRNA:   3'- -GUCCGGCU----------UUGCCGGUa-CGuGuGGUC- -5'
5956 3' -56.4 NC_001806.1 + 88673 0.74 0.46786
Target:  5'- aGGGCC---GCGGCCAUGCGCuCgCAGa -3'
miRNA:   3'- gUCCGGcuuUGCCGGUACGUGuG-GUC- -5'
5956 3' -56.4 NC_001806.1 + 46142 0.73 0.486811
Target:  5'- uGGGuCCGGAGgGGCCGgacGCACACCc- -3'
miRNA:   3'- gUCC-GGCUUUgCCGGUa--CGUGUGGuc -5'
5956 3' -56.4 NC_001806.1 + 54651 0.73 0.486811
Target:  5'- uGGGCCGuAACGGCCGacuuaGC-CGCCGGu -3'
miRNA:   3'- gUCCGGCuUUGCCGGUa----CGuGUGGUC- -5'
5956 3' -56.4 NC_001806.1 + 3819 0.73 0.496421
Target:  5'- cCAGGCCccagccGAAGCGGCCG-GC-CGCCAu -3'
miRNA:   3'- -GUCCGG------CUUUGCCGGUaCGuGUGGUc -5'
5956 3' -56.4 NC_001806.1 + 133236 0.73 0.496421
Target:  5'- gCGGGCCaucGAGACGGCCGUGgGaGCCGu -3'
miRNA:   3'- -GUCCGG---CUUUGCCGGUACgUgUGGUc -5'
5956 3' -56.4 NC_001806.1 + 150981 0.73 0.496421
Target:  5'- gCGGGCCc--ACGaGCCGcgGCGCGCCAGg -3'
miRNA:   3'- -GUCCGGcuuUGC-CGGUa-CGUGUGGUC- -5'
5956 3' -56.4 NC_001806.1 + 24673 0.73 0.525743
Target:  5'- gGGGCgCGAGGCGGU---GCGCGCCGGc -3'
miRNA:   3'- gUCCG-GCUUUGCCGguaCGUGUGGUC- -5'
5956 3' -56.4 NC_001806.1 + 3359 0.72 0.545649
Target:  5'- gCGGGCCGGGcccCGGCCAgccccgggacgGC-CGCCAGg -3'
miRNA:   3'- -GUCCGGCUUu--GCCGGUa----------CGuGUGGUC- -5'
5956 3' -56.4 NC_001806.1 + 118813 0.72 0.555694
Target:  5'- cCAGGUCGAAAUccagacucgGGCuCAUGC-CACCGGc -3'
miRNA:   3'- -GUCCGGCUUUG---------CCG-GUACGuGUGGUC- -5'
5956 3' -56.4 NC_001806.1 + 73992 0.72 0.555694
Target:  5'- -cGGCCGggGCGGCCccGCagggggcuccGCGCCc- -3'
miRNA:   3'- guCCGGCuuUGCCGGuaCG----------UGUGGuc -5'
5956 3' -56.4 NC_001806.1 + 75212 0.72 0.575936
Target:  5'- -cGGUgGAuGCGGCCGUGCgggcGCACCGc -3'
miRNA:   3'- guCCGgCUuUGCCGGUACG----UGUGGUc -5'
5956 3' -56.4 NC_001806.1 + 11930 0.71 0.586121
Target:  5'- aUAGGCCGA----GCCGuUGUACGCCAGa -3'
miRNA:   3'- -GUCCGGCUuugcCGGU-ACGUGUGGUC- -5'
5956 3' -56.4 NC_001806.1 + 30636 0.71 0.596339
Target:  5'- aGGGCCGGGggggcGCGGCCAgggUGgGC-CCGGg -3'
miRNA:   3'- gUCCGGCUU-----UGCCGGU---ACgUGuGGUC- -5'
5956 3' -56.4 NC_001806.1 + 125893 0.71 0.596339
Target:  5'- gGGGUuuuaCGAGGCGGCCAcGCAaaACCAGg -3'
miRNA:   3'- gUCCG----GCUUUGCCGGUaCGUg-UGGUC- -5'
5956 3' -56.4 NC_001806.1 + 43502 0.71 0.606584
Target:  5'- gGGGCCGugGCGGCCcaucaggacaagAUGCgGCGCCuGg -3'
miRNA:   3'- gUCCGGCuuUGCCGG------------UACG-UGUGGuC- -5'
5956 3' -56.4 NC_001806.1 + 24848 0.71 0.616849
Target:  5'- aCGGGCCGcAGCGGCacCGUGCugGCg-- -3'
miRNA:   3'- -GUCCGGCuUUGCCG--GUACGugUGguc -5'
5956 3' -56.4 NC_001806.1 + 93290 0.71 0.627124
Target:  5'- gAGGgCGggGCGGCCGU---CGCCAGu -3'
miRNA:   3'- gUCCgGCuuUGCCGGUAcguGUGGUC- -5'
5956 3' -56.4 NC_001806.1 + 2926 0.71 0.627124
Target:  5'- gCGGGCCGccgccuccGGGCGGCCggGcCGgGCCGGg -3'
miRNA:   3'- -GUCCGGC--------UUUGCCGGuaC-GUgUGGUC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.