miRNA display CGI


Results 1 - 20 of 150 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5956 3' -56.4 NC_001806.1 + 151691 0.68 0.804336
Target:  5'- -cGGCCGggGgGGCCcgggcUGCcCGCCGc -3'
miRNA:   3'- guCCGGCuuUgCCGGu----ACGuGUGGUc -5'
5956 3' -56.4 NC_001806.1 + 151569 0.68 0.804336
Target:  5'- gGGGCCGcgauGGCGGCgGcgGCGgGCCAu -3'
miRNA:   3'- gUCCGGCu---UUGCCGgUa-CGUgUGGUc -5'
5956 3' -56.4 NC_001806.1 + 151544 0.69 0.70877
Target:  5'- uGGGCCcGGGCGGCCggGgGCGgCGGg -3'
miRNA:   3'- gUCCGGcUUUGCCGGuaCgUGUgGUC- -5'
5956 3' -56.4 NC_001806.1 + 151448 0.69 0.70877
Target:  5'- gGGGCggcggCGggGCGGCCGcggGCGCGCUc- -3'
miRNA:   3'- gUCCG-----GCuuUGCCGGUa--CGUGUGGuc -5'
5956 3' -56.4 NC_001806.1 + 151289 0.69 0.70877
Target:  5'- gGGGCCGGggggcggcggcgGugGGCCggGCcucugGCGCCGGc -3'
miRNA:   3'- gUCCGGCU------------UugCCGGuaCG-----UGUGGUC- -5'
5956 3' -56.4 NC_001806.1 + 150981 0.73 0.496421
Target:  5'- gCGGGCCc--ACGaGCCGcgGCGCGCCAGg -3'
miRNA:   3'- -GUCCGGcuuUGC-CGGUa-CGUGUGGUC- -5'
5956 3' -56.4 NC_001806.1 + 150864 0.68 0.804336
Target:  5'- --cGCCGGGcCGGCUccGCGgGCCAGg -3'
miRNA:   3'- gucCGGCUUuGCCGGuaCGUgUGGUC- -5'
5956 3' -56.4 NC_001806.1 + 147757 0.66 0.89122
Target:  5'- gCGGGucCCGAcGCGGCCGcGgACGCgGGg -3'
miRNA:   3'- -GUCC--GGCUuUGCCGGUaCgUGUGgUC- -5'
5956 3' -56.4 NC_001806.1 + 147703 0.69 0.748305
Target:  5'- gCGGGCCccgGAGGCGGCgcucGCACGCaCGGg -3'
miRNA:   3'- -GUCCGG---CUUUGCCGgua-CGUGUG-GUC- -5'
5956 3' -56.4 NC_001806.1 + 146195 0.67 0.813176
Target:  5'- cCGGGCC---GCGGCUcUGUgguuaACACCAGa -3'
miRNA:   3'- -GUCCGGcuuUGCCGGuACG-----UGUGGUC- -5'
5956 3' -56.4 NC_001806.1 + 145728 0.66 0.862457
Target:  5'- -uGGCCGcgcgggugcGCGuGCCuuUGCACACCAa -3'
miRNA:   3'- guCCGGCuu-------UGC-CGGu-ACGUGUGGUc -5'
5956 3' -56.4 NC_001806.1 + 145013 0.69 0.728706
Target:  5'- gGGGCCccacAACGGCCcgGCGCAUg-- -3'
miRNA:   3'- gUCCGGcu--UUGCCGGuaCGUGUGguc -5'
5956 3' -56.4 NC_001806.1 + 144615 0.66 0.884362
Target:  5'- --aGCCGggGCGGCCAagGgGCGUCGGc -3'
miRNA:   3'- gucCGGCuuUGCCGGUa-CgUGUGGUC- -5'
5956 3' -56.4 NC_001806.1 + 141418 0.74 0.440169
Target:  5'- cCAGGCCGggGCGGC---GCGCgGCCAa -3'
miRNA:   3'- -GUCCGGCuuUGCCGguaCGUG-UGGUc -5'
5956 3' -56.4 NC_001806.1 + 136534 0.67 0.854728
Target:  5'- aCGGGCCGcucGGGCcGCCcgGCGCAaagCAGg -3'
miRNA:   3'- -GUCCGGC---UUUGcCGGuaCGUGUg--GUC- -5'
5956 3' -56.4 NC_001806.1 + 135974 0.66 0.89122
Target:  5'- gAGGCgCGAGGCGGCCG---AC-CCGGc -3'
miRNA:   3'- gUCCG-GCUUUGCCGGUacgUGuGGUC- -5'
5956 3' -56.4 NC_001806.1 + 134299 0.66 0.890544
Target:  5'- aGGGCCGAGagaacggGgGGCgGguUGUugGCCAGc -3'
miRNA:   3'- gUCCGGCUU-------UgCCGgU--ACGugUGGUC- -5'
5956 3' -56.4 NC_001806.1 + 133469 0.68 0.804336
Target:  5'- uGGGCCuGAcAACGG-CAUGCGUGCCGGa -3'
miRNA:   3'- gUCCGG-CU-UUGCCgGUACGUGUGGUC- -5'
5956 3' -56.4 NC_001806.1 + 133236 0.73 0.496421
Target:  5'- gCGGGCCaucGAGACGGCCGUGgGaGCCGu -3'
miRNA:   3'- -GUCCGG---CUUUGCCGGUACgUgUGGUc -5'
5956 3' -56.4 NC_001806.1 + 132357 0.67 0.83035
Target:  5'- uGGGCCu--GCGGCCAcGCggGCACCc- -3'
miRNA:   3'- gUCCGGcuuUGCCGGUaCG--UGUGGuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.