miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5957 3' -50.4 NC_001806.1 + 81958 0.66 0.996443
Target:  5'- ---cGCCGGGUUCgGCGGCga--CGGg -3'
miRNA:   3'- cuaaUGGCUCGAGgCGUUGaaacGCC- -5'
5957 3' -50.4 NC_001806.1 + 143127 0.66 0.995824
Target:  5'- --cUGCCGGGaggggCCGCGGauggGCGGg -3'
miRNA:   3'- cuaAUGGCUCga---GGCGUUgaaaCGCC- -5'
5957 3' -50.4 NC_001806.1 + 122230 0.66 0.995824
Target:  5'- ---cACCG-GCUCgGUcGCcUUGCGGa -3'
miRNA:   3'- cuaaUGGCuCGAGgCGuUGaAACGCC- -5'
5957 3' -50.4 NC_001806.1 + 50160 0.66 0.995119
Target:  5'- ---cGCCGcgguGUUCCGCAGCUcgcUGgGGu -3'
miRNA:   3'- cuaaUGGCu---CGAGGCGUUGAa--ACgCC- -5'
5957 3' -50.4 NC_001806.1 + 16161 0.66 0.995119
Target:  5'- --cUGCCGGGagaCCGCuGCgaucUGCGGg -3'
miRNA:   3'- cuaAUGGCUCga-GGCGuUGaa--ACGCC- -5'
5957 3' -50.4 NC_001806.1 + 2946 0.66 0.99432
Target:  5'- ---gGCCGGGCcgggCCGgGACUcUUGCGc -3'
miRNA:   3'- cuaaUGGCUCGa---GGCgUUGA-AACGCc -5'
5957 3' -50.4 NC_001806.1 + 136369 0.66 0.993419
Target:  5'- ---gGCCGGcgcGCUCCGCGGCcuccGCGa -3'
miRNA:   3'- cuaaUGGCU---CGAGGCGUUGaaa-CGCc -5'
5957 3' -50.4 NC_001806.1 + 75778 0.66 0.993419
Target:  5'- ----gUCGAGCUCCGUcgccugcaGGCgcugGCGGg -3'
miRNA:   3'- cuaauGGCUCGAGGCG--------UUGaaa-CGCC- -5'
5957 3' -50.4 NC_001806.1 + 105163 0.66 0.993419
Target:  5'- aGggUGCCGAGCcCCagaGCAAC---GCGGg -3'
miRNA:   3'- -CuaAUGGCUCGaGG---CGUUGaaaCGCC- -5'
5957 3' -50.4 NC_001806.1 + 115854 0.67 0.992513
Target:  5'- cGAggGCCGGGCcccauaaaacccaagCCGgGACUccGCGGa -3'
miRNA:   3'- -CUaaUGGCUCGa--------------GGCgUUGAaaCGCC- -5'
5957 3' -50.4 NC_001806.1 + 84157 0.67 0.992407
Target:  5'- ---cGCgCGAcgugGCUCCGCG-CUUUGCGc -3'
miRNA:   3'- cuaaUG-GCU----CGAGGCGUuGAAACGCc -5'
5957 3' -50.4 NC_001806.1 + 148005 0.67 0.992407
Target:  5'- ---cGCCGcGGCU-CGCGACUg-GCGGg -3'
miRNA:   3'- cuaaUGGC-UCGAgGCGUUGAaaCGCC- -5'
5957 3' -50.4 NC_001806.1 + 51345 0.67 0.990013
Target:  5'- cGUUcCCGAGCggCGCAuCUUcgGCGGg -3'
miRNA:   3'- cUAAuGGCUCGagGCGUuGAAa-CGCC- -5'
5957 3' -50.4 NC_001806.1 + 113747 0.67 0.990013
Target:  5'- ---gACCG-GC-CCGgAGCUggGCGGg -3'
miRNA:   3'- cuaaUGGCuCGaGGCgUUGAaaCGCC- -5'
5957 3' -50.4 NC_001806.1 + 89267 0.67 0.990013
Target:  5'- ---gGCUG-GCUCCGCGAgggccgGCGGg -3'
miRNA:   3'- cuaaUGGCuCGAGGCGUUgaaa--CGCC- -5'
5957 3' -50.4 NC_001806.1 + 33742 0.67 0.990013
Target:  5'- ---cGCCG-GCUCUGCggUgucgGCGGc -3'
miRNA:   3'- cuaaUGGCuCGAGGCGuuGaaa-CGCC- -5'
5957 3' -50.4 NC_001806.1 + 50709 0.67 0.988613
Target:  5'- ---cGCCGGGCUCguccUGCAGCggcUGCuGGg -3'
miRNA:   3'- cuaaUGGCUCGAG----GCGUUGaa-ACG-CC- -5'
5957 3' -50.4 NC_001806.1 + 103928 0.67 0.988613
Target:  5'- ---aGCCGGGUcaCGCGGCUgacGCGGa -3'
miRNA:   3'- cuaaUGGCUCGagGCGUUGAaa-CGCC- -5'
5957 3' -50.4 NC_001806.1 + 150799 0.67 0.988613
Target:  5'- --gUGCgGAGCUCCcgGgAGCUccGCGGa -3'
miRNA:   3'- cuaAUGgCUCGAGG--CgUUGAaaCGCC- -5'
5957 3' -50.4 NC_001806.1 + 3260 0.67 0.986403
Target:  5'- ---aACCGcAGCUCgCGCAGCcacgcgcgcagGCGGg -3'
miRNA:   3'- cuaaUGGC-UCGAG-GCGUUGaaa--------CGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.