miRNA display CGI


Results 21 - 40 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5957 5' -58.9 NC_001806.1 + 28143 0.69 0.586629
Target:  5'- cGAgUACCCGCCGG-CCUgagggccgcccccaGCGCGAGgUg -3'
miRNA:   3'- -UUgGUGGGCGGCCaGGA--------------UGCGCUUgA- -5'
5957 5' -58.9 NC_001806.1 + 30917 0.66 0.767416
Target:  5'- gGGCCGucCCCGCgGGcggCCUACGCGcuACc -3'
miRNA:   3'- -UUGGU--GGGCGgCCa--GGAUGCGCu-UGa -5'
5957 5' -58.9 NC_001806.1 + 41700 0.75 0.288569
Target:  5'- uGCCGCCCGCCGuGUCCUccccgggACugGCGGGCg -3'
miRNA:   3'- uUGGUGGGCGGC-CAGGA-------UG--CGCUUGa -5'
5957 5' -58.9 NC_001806.1 + 43081 0.66 0.794734
Target:  5'- uAACgCACCCGUCGGUCgCauaaaGCGCGGu-- -3'
miRNA:   3'- -UUG-GUGGGCGGCCAG-Ga----UGCGCUuga -5'
5957 5' -58.9 NC_001806.1 + 44106 0.67 0.71967
Target:  5'- gAACCaaaACCC-CCGGUCCcGCGCucGCUc -3'
miRNA:   3'- -UUGG---UGGGcGGCCAGGaUGCGcuUGA- -5'
5957 5' -58.9 NC_001806.1 + 46132 0.72 0.419546
Target:  5'- cGCCACCCGCUgGGUCCggagggGC-CGGACg -3'
miRNA:   3'- uUGGUGGGCGG-CCAGGa-----UGcGCUUGa -5'
5957 5' -58.9 NC_001806.1 + 47988 0.69 0.598656
Target:  5'- uGCCaaucgagGCCCGCCGG--CUGCGgGAGCUa -3'
miRNA:   3'- uUGG-------UGGGCGGCCagGAUGCgCUUGA- -5'
5957 5' -58.9 NC_001806.1 + 48040 0.68 0.660066
Target:  5'- uAACCuCCCGCUGGUgCgcaGCGCG-GCUa -3'
miRNA:   3'- -UUGGuGGGCGGCCAgGa--UGCGCuUGA- -5'
5957 5' -58.9 NC_001806.1 + 50697 0.67 0.748606
Target:  5'- cGCCAUucuggCCGCCGGgcucgUCCUGCaGCGGcuGCUg -3'
miRNA:   3'- uUGGUG-----GGCGGCC-----AGGAUG-CGCU--UGA- -5'
5957 5' -58.9 NC_001806.1 + 50874 0.69 0.609711
Target:  5'- cACC-CCCGCCaaGUUCUGgGCGGACUc -3'
miRNA:   3'- uUGGuGGGCGGc-CAGGAUgCGCUUGA- -5'
5957 5' -58.9 NC_001806.1 + 51813 0.74 0.353953
Target:  5'- cGCCACCgugGCCGG-CCUGCGCGAc-- -3'
miRNA:   3'- uUGGUGGg--CGGCCaGGAUGCGCUuga -5'
5957 5' -58.9 NC_001806.1 + 58341 0.67 0.709867
Target:  5'- cGGCCGCCUgGCCcG-CCUugGUGAGCg -3'
miRNA:   3'- -UUGGUGGG-CGGcCaGGAugCGCUUGa -5'
5957 5' -58.9 NC_001806.1 + 59063 0.68 0.68011
Target:  5'- gGGCCACaCCGCCaGGggaauccgucaUCCcaACGCGGGCUg -3'
miRNA:   3'- -UUGGUG-GGCGG-CC-----------AGGa-UGCGCUUGA- -5'
5957 5' -58.9 NC_001806.1 + 63788 0.69 0.609711
Target:  5'- cACgCACgCGCCGGUCggACGCGcGCUc -3'
miRNA:   3'- uUG-GUGgGCGGCCAGgaUGCGCuUGA- -5'
5957 5' -58.9 NC_001806.1 + 66281 0.66 0.789366
Target:  5'- cGCCACUCGCCGGggcgccacaccacgCCUuccagaaugacaACGgGGACg -3'
miRNA:   3'- uUGGUGGGCGGCCa-------------GGA------------UGCgCUUGa -5'
5957 5' -58.9 NC_001806.1 + 68154 0.74 0.353953
Target:  5'- -cUCACCCGCCGGUCCgccCuCGGACg -3'
miRNA:   3'- uuGGUGGGCGGCCAGGau-GcGCUUGa -5'
5957 5' -58.9 NC_001806.1 + 73114 0.66 0.776651
Target:  5'- cGGCCgGgCCGCCGGUCgCcgAgGCGGGCg -3'
miRNA:   3'- -UUGG-UgGGCGGCCAG-Ga-UgCGCUUGa -5'
5957 5' -58.9 NC_001806.1 + 75494 0.67 0.739048
Target:  5'- cGACCACCggCGCgCGGgaaagCCU-CGCGGGCc -3'
miRNA:   3'- -UUGGUGG--GCG-GCCa----GGAuGCGCUUGa -5'
5957 5' -58.9 NC_001806.1 + 77533 0.66 0.758066
Target:  5'- aGGCCcgggGCCC-CUGGUgCUGCGCGAGg- -3'
miRNA:   3'- -UUGG----UGGGcGGCCAgGAUGCGCUUga -5'
5957 5' -58.9 NC_001806.1 + 78935 0.68 0.68011
Target:  5'- cGCCcgggGCCCGCCGuGUCUggugcuCGUGGACa -3'
miRNA:   3'- uUGG----UGGGCGGC-CAGGau----GCGCUUGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.