miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5959 5' -53.4 NC_001806.1 + 41908 0.66 0.9649
Target:  5'- -----cUCCCGGGGGUCAcgUUguguuugacguacucCCCGAUa -3'
miRNA:   3'- aauauuGGGGCCCCCAGU--AA---------------GGGUUG- -5'
5959 5' -53.4 NC_001806.1 + 134528 0.66 0.963533
Target:  5'- -cGUGGCUUCGGGGGcaGUUCuCCAGg -3'
miRNA:   3'- aaUAUUGGGGCCCCCagUAAG-GGUUg -5'
5959 5' -53.4 NC_001806.1 + 93919 0.66 0.963533
Target:  5'- ---gGACCCCGGGGcUCAg--CCAGa -3'
miRNA:   3'- aauaUUGGGGCCCCcAGUaagGGUUg -5'
5959 5' -53.4 NC_001806.1 + 29385 0.66 0.963533
Target:  5'- -cGUGACgCCCaGcGGGUCGUucagcaccaUCCCGAUc -3'
miRNA:   3'- aaUAUUG-GGGcC-CCCAGUA---------AGGGUUG- -5'
5959 5' -53.4 NC_001806.1 + 147228 0.66 0.963533
Target:  5'- ---cGGCCCCcgcGGGGGUCGgggCCGAg -3'
miRNA:   3'- aauaUUGGGG---CCCCCAGUaagGGUUg -5'
5959 5' -53.4 NC_001806.1 + 56264 0.66 0.959954
Target:  5'- ---gGGCCCCGuccccGGGGUCcUUCCUg-- -3'
miRNA:   3'- aauaUUGGGGC-----CCCCAGuAAGGGuug -5'
5959 5' -53.4 NC_001806.1 + 90995 0.66 0.959954
Target:  5'- ---aGACCCCGcGGGG-CGggCgCGACg -3'
miRNA:   3'- aauaUUGGGGC-CCCCaGUaaGgGUUG- -5'
5959 5' -53.4 NC_001806.1 + 147740 0.66 0.959954
Target:  5'- ---cGGCCgCgCGGGGGcgcgCGggUCCCGACg -3'
miRNA:   3'- aauaUUGG-G-GCCCCCa---GUa-AGGGUUG- -5'
5959 5' -53.4 NC_001806.1 + 85415 0.66 0.954949
Target:  5'- ---gGACCCCacuuacGGGGGccacaugcuguacgUCAUcuuUCCCGGCa -3'
miRNA:   3'- aauaUUGGGG------CCCCC--------------AGUA---AGGGUUG- -5'
5959 5' -53.4 NC_001806.1 + 35606 0.66 0.947788
Target:  5'- --uUGGCCCUGGcGGGUUAUUggCAACc -3'
miRNA:   3'- aauAUUGGGGCC-CCCAGUAAggGUUG- -5'
5959 5' -53.4 NC_001806.1 + 53938 0.66 0.947788
Target:  5'- ----uGCUCCauGGGGGUCGgaUCCCAGg -3'
miRNA:   3'- aauauUGGGG--CCCCCAGUa-AGGGUUg -5'
5959 5' -53.4 NC_001806.1 + 113276 0.66 0.947788
Target:  5'- -gGUGGCCgacguggagcugCCGGGGGgggaCGUUCCCccGGCc -3'
miRNA:   3'- aaUAUUGG------------GGCCCCCa---GUAAGGG--UUG- -5'
5959 5' -53.4 NC_001806.1 + 80586 0.67 0.938447
Target:  5'- aUGUAGCaCCCGGGGaGUa---UCCGGCg -3'
miRNA:   3'- aAUAUUG-GGGCCCC-CAguaaGGGUUG- -5'
5959 5' -53.4 NC_001806.1 + 92607 0.67 0.938447
Target:  5'- ---aAGCCCCcGGGGUCcaa-CCAGCc -3'
miRNA:   3'- aauaUUGGGGcCCCCAGuaagGGUUG- -5'
5959 5' -53.4 NC_001806.1 + 44847 0.67 0.938447
Target:  5'- -----gUCCCGGGGGcaaAUUCCCGc- -3'
miRNA:   3'- aauauuGGGGCCCCCag-UAAGGGUug -5'
5959 5' -53.4 NC_001806.1 + 18572 0.67 0.933399
Target:  5'- ---gGACCCgCGGGGuUCugggGUUUCCAGCg -3'
miRNA:   3'- aauaUUGGG-GCCCCcAG----UAAGGGUUG- -5'
5959 5' -53.4 NC_001806.1 + 132138 0.67 0.933399
Target:  5'- cUAUGGCCCUGGcGGcGcgCGUugccgagcaUCCCGACg -3'
miRNA:   3'- aAUAUUGGGGCC-CC-Ca-GUA---------AGGGUUG- -5'
5959 5' -53.4 NC_001806.1 + 116249 0.67 0.922543
Target:  5'- -----uCUCCGGaGGcGUCAgUCCCGACa -3'
miRNA:   3'- aauauuGGGGCC-CC-CAGUaAGGGUUG- -5'
5959 5' -53.4 NC_001806.1 + 28947 0.67 0.922543
Target:  5'- ----cGCCCCGGaugucuGGGUguUUCCCuGCg -3'
miRNA:   3'- aauauUGGGGCC------CCCAguAAGGGuUG- -5'
5959 5' -53.4 NC_001806.1 + 2719 0.67 0.922543
Target:  5'- ----cGCCCaGGGGGUCGgggCCCucGGCg -3'
miRNA:   3'- aauauUGGGgCCCCCAGUaa-GGG--UUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.